Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq7785 118 8e-22 >seq7785 Length=64017 Score = 118 bits (130), Expect = 8e-22 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 112153 TCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTT 112212 || ||| || ||| || |||||||| ||||||||||| ||||| ||| | | |||| Sbjct 38350 TCTCTTGTACTATTCGGGTTCCAAATTTTCACTCCTTTGTCGGATAATTCTTTCGAATTT 38291 Query 112213 GTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTA 112272 |||||||||||||| |||||||| |||||||| || || ||| |||| | |||| ||| Sbjct 38290 GTGGATCCTCTAATGAACCATAGTAATTCTTCTACGACACCTCTCCAAAATACTCGTTTG 38231 Query 112273 GTAGTTAGCAGTGGAAAA 112290 || |||| || ||||||| Sbjct 38230 GTGGTTACCAATGGAAAA 38213 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 112153 TCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTT 112212 || ||| || ||| || |||||||| ||||||||||| ||||| ||| | | ||| Sbjct 36826 TCTCTTGTACTATTCGGGTTCCAAATTTTCACTCCTTTGTCGGATAATTCTTTCGAATTC 36767 Query 112213 GTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTA 112272 || |||||||| || ||||||| |||||||| || || |||||||| | |||| ||| Sbjct 36766 GTAGATCCTCTGATGAACCATAATAATTCTTCTACTACACCTTTCCAAAATACTCGTTTT 36707 Query 112273 GTAGTTAGCAGTGGAAA 112289 || || | ||| ||||| Sbjct 36706 GTGGTCAACAGCGGAAA 36690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391626235008691