Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq18352 150 2e-31 seq39894 149 7e-31 seq2470 145 9e-30 seq38187 114 1e-20 >seq18352 Length=35742 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || | ||||| || || || ||||| ||||| ||| | | Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | |||||||||||||| || || || || |||||||| || || Sbjct 20278 CGATACCATCGAAAACGTCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 20337 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| ||||| ||||| || || ||||| |||| | || || | || ||||| Sbjct 20338 GCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATTATAA 20397 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| || | ||| | || ||||| ||||||||||| Sbjct 20398 CATCCAAAAAGAATCTACGTTACATTTGGTATTGCGACTTCGCGGTGG 20445 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || ||||| || || || || || || || | | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| |||||||| ||||| ||||||||||| || |||||| Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || || || |||||||| |||| || || || | |||||||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCGGACTATAAC 19486 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | ||||| ||||||||||| || | ||| | ||||| Sbjct 19487 ATTCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCT 19524 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | ||||| || ||||| || || || || || || | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| ||||||||||||||||| || || || || ||||| Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCAA 19654 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || ||||| |||||||| || | | ||||| | ||||| || Sbjct 19655 CAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAAC 19714 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||||| ||||||||||| || | ||| | ||||| Sbjct 19715 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCT 19752 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || ||||| || ||||| || || || ||| | | Sbjct 19990 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAG 20049 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | ||||| ||||| || || || || || || ||||| ||||| Sbjct 20050 TGACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCA 20109 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| ||||||| || || || || ||||| || | | | ||||| | ||||| || Sbjct 20110 GCAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAA 20169 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||||| || || ||| Sbjct 20170 CATCCAAAAGGAATCTACGCTCCAT 20194 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || ||| | || || || || || || || |||||||| || | Sbjct 19078 AATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACCAAG 19137 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | || || ||||||||||| || || || || || ||||| || Sbjct 19138 CGACACCATTGAAAACGTTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGATCA 19197 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | ||||| || || ||||||||||| || | | | |||||| ||||||| || Sbjct 19198 GCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCAGACTACAA 19257 Query 27585 TGTCCAAAAGGAATCCAC 27602 | ||||| || || || Sbjct 19258 CATTCAAAAAGAGTCGAC 19275 >seq39894 Length=23042 Score = 149 bits (164), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || ||||||||||| || ||| | || || ||| | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || |||||||||||||| || || ||||| || || ||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || | | || || || || || || | || |||| ||||| || ||| || ||||| Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGC-GATTATAA 12064 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | ||||||||||| ||||||||| | ||||| ||||||||||||||| Sbjct 12063 TATTCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCGCGGTGGA 12015 Score = 136 bits (150), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||||| || || || || || ||| | || || || | Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || |||||||||||||| || || ||||| || || || Sbjct 12638 GATACGATCGAAAACGTAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 12579 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || | || ||||| || || ||| | || || | ||| || || ||| || ||||| Sbjct 12578 CAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGC-GATTATAA 12520 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | ||||||||||| ||||||||| | ||||| ||||||||||||||| Sbjct 12519 TATTCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCGCGGTGGA 12471 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || ||||| || || || |||||||| | || || || || Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| |||| || |||||||| || ||||| || || || || ||||| Sbjct 11955 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 11896 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 || | ||||||| || || || ||| | || |||| ||||| | ||| ||||||| Sbjct 11895 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGC-GACTATA 11837 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||||||||||| || || ||||| ||| | || | || ||||| Sbjct 11836 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 11788 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || || || || ||||| | || || || || Sbjct 12471 AATGCAAATTTTCGTAAAAACATTGACAGGAAAAACGATTACGTTAGAAGTCGAACCATC 12412 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || |||| || |||||||| || ||||| || || || || ||||| Sbjct 12411 CGACACGATTGAGAACGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCCGACCA 12352 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 || || | ||||| || ||||| || || ||||||| |||||| || ||| ||||||| Sbjct 12351 ACAACGATTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGTACACTCAGC-GACTATA 12293 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||||||||||| || || ||||| ||| | || | || ||||| Sbjct 12292 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 12244 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || ||||||||||| || ||| | ||||| ||| | Sbjct 12926 ATGCAGATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGCCGTCC 12867 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| |||||||| ||||| ||||| || || || || ||||| Sbjct 12866 GACACGATCGAGAACGTGAAAGCTAAAATCCAGGATAAGGAAGGTATCCCACCGGACCAA 12807 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || | ||||||| || || || ||| | || |||| ||||| | ||| |||||||| Sbjct 12806 CAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACGTTGAGC-GACTATAA 12748 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||||||||| || || ||||| ||| | || | || ||||| Sbjct 12747 TATTCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 12700 >seq2470 Length=523 Score = 145 bits (160), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || ||||||||||| || ||| | || || ||| | Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || |||||||||||||| || || ||||| || || ||| Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 342 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || | | || || || || || || | || |||| ||||| || ||| || ||||| Sbjct 341 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGC-GATTATAA 283 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | ||||| ||||| ||||||||| | ||||| ||||||||||||||| Sbjct 282 TATTCAAAAAGAATCGACTCTTCATTTGGTCTTACGTCTTCGCGGTGGA 234 Score = 136 bits (150), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || ||||| ||||| || |||||||| | || || || || Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| |||| || |||||||| || ||||| || || || || ||||| Sbjct 174 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 115 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 || | ||||||| || || || ||| | || |||| ||||| | ||| ||||||| Sbjct 114 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGC-GACTATA 56 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||||||||||| || || ||||| ||| | || | || ||||| Sbjct 55 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 7 >seq38187 Length=9425 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || ||||| ||||| || || || || | | || ||| || | Sbjct 2986 ATGCAAATTTTCGTTAAAACGCTAACCGGTAAAACAATCACATTGAAAGTCGAGCCATGC 3045 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||||||||||| ||||| || || || || || || || || Sbjct 3046 GATACTATTGAAAACGTCAAGGCTAAAATACAGGATAAAGAAGGTATCCCACCGGATCAA 3105 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || |||| || || ||||| ||| | | || | |||||| | ||| || ||||| Sbjct 3106 CAACGATTAATCTTCGCCGGTAAACAATTGAAAGACGGCCGTACCTTGAGC-GATTATAA 3164 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 | ||||| |||||||| |||||| | || || |||||| Sbjct 3165 CATTCAAAAAGAATCCACACTTCATTTGGTGTTACGTCTT 3204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569833784469840