Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq26624 98.7 1e-15 seq33840 84.2 3e-11 >seq26624 Length=38659 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 32701 TAGAATATCTA-GATACTATTTTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTT 32759 |||||| ||| ||||| | |||||||| | || || ||| ||| ||| | | ||| Sbjct 37707 TAGAAT-TCTGCGATACCTTCTTCTTCATTTTAAGGAAAAAAGATAAACAACTCACATTT 37649 Query 32760 TTGCACGTATACCACCATTTTACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTT 32819 || ||||| || || |||| ||||| || | || | ||||| || || |||| | Sbjct 37648 TTACACGTGTATCATCATTCCACCATTTTCTCCTTGTGGTGGATTGGTATAAAATACGTA 37589 Query 32820 GCAGGAGGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTAT 32879 || | || ||||||| || | | ||| | || |||||| | ||||| Sbjct 37588 CCAAGTGGCTCAACATTTTTCCCTGCGATGGTGAATAGCTCAATTCATGTTCTCATGTAC 37529 Query 32880 AGTTATTACGGATTAACAGCAATAGGTCCTTCC-TTGCGAAAATATCTATGGTGGAAAAA 32938 | ||||||||| ||| ||||||| || || | |||||||| ||| ||||||||||||| Sbjct 37528 ACTTATTACGGTTTAGCAGCAATGGGACCGACAATTGCGAAA-TATTTATGGTGGAAAAA 37470 Query 32939 ATATTTAACTATCATACAATTG 32960 ||| || ||||| | |||||| Sbjct 37469 ATACTTGACTATGCTCCAATTG 37448 >seq33840 Length=18965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/122 (77%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 89289 GGTATATGCGACAACTTACTAACTTCTATAGTTAGGGCATGGGATATAT-CAAAGCCCCT 89347 ||| | ||||| || ||||| || ||| | | || ||||||||| |||| || | Sbjct 12922 GGTCTTTGCGATAATTTACTGACGACTACGCTACGAGCTTGGGATATAAGCAAA--CCTT 12979 Query 89348 TATT-TTTTGTCCTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACAAA 89406 |||| ||||| ||||||||||||||| ||||||||| |||||||| || | ||||||| Sbjct 12980 TATTATTTTGCCCTGCCATGAATACTAGAATGTGGGATCATCCTATAACAGCATCACAAG 13039 Query 89407 TA 89408 || Sbjct 13040 TA 13041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602676714265680