Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7785 89.7 5e-13 >seq7785 Length=64017 Score = 89.7 bits (98), Expect = 5e-13 Identities = 216/327 (66%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 || || || ||||| ||||| |||||||| || || || ||||| | | | | Sbjct 36934 GGTCCTGTTTACGGATTCCAATGGAGACATTTCGGAGCTGAGTACAAAGACATGCACACC 36993 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || || | |||| ||| || || || |||| || || ||| | | | ||| Sbjct 36994 GATTACACGAACAAAGGAGTGGATCAACTACAAAACGTCATAGATACCATTAGGAATAAC 37053 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || || ||| | || | | || ||||||||||| ||| | ||| ||||| Sbjct 37054 CCAGACTGTAGACGAATAATCTTATGTGCGTGGAACCCTCTAGATTTACCTAAAATGGCC 37113 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 | || || || || | | || || |||| | || || || |||| ||||| Sbjct 37114 TTACCTCCTTGTCATTGCTTAGTACAGTTTTACGCAGTAAACGGTGAATTGTCATGCCAA 37173 Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCT 34702 | ||||| || || | || ||||| ||||| || || ||||| || ||||||||| | Sbjct 37174 ATGTATCAGCGTTCTGCTGATATGGGTTTAGGCGTACCATTCAATATCGCTAGTTACTCC 37233 Query 34703 CTGCTCACGTACATGATCGCTCATGTC 34729 ||||||| |||||||||||||| ||| Sbjct 37234 TTGCTCACTTACATGATCGCTCACGTC 37260 Score = 89.7 bits (98), Expect = 5e-13 Identities = 216/327 (66%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| |||||||||||||| ||||||| | ||||||||| || ||||| || || ||||| Sbjct 37260 GACGTGAGCGATCATGTAAGTGAGCAAGGAGTAACTAGCGATATTGAATGGTACGCCTAA 37201 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| || | || || ||||| | ||||| |||| || || || | |||| || Sbjct 37200 ACCCATATCAGCAGAACGCTGATACATTTGGCATGACAATTCACCGTTTACTGCGTAAAA 37141 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || | | || || || || | ||||| ||| | ||| ||||||||||| Sbjct 37140 CTGTACTAAGCAATGACAAGGAGGTAAGGCCATTTTAGGTAAATCTAGAGGGTTCCACGC 37081 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 || | | || | ||| || ||||| | | | ||| || || |||| || || Sbjct 37080 ACATAAGATTATTCGTCTACAGTCTGGGTTATTCCTAATGGTATCTATGACGTTTTGTAG 37021 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 || ||| |||| | || || || | | | | ||||| || || || || Sbjct 37020 TTGATCCACTCCTTTGTTCGTGTAATCGGTGTGCATGTCTTTGTACTCAGCTCCGAAATG 36961 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCC 6942 |||||| ||||| ||||| || || || Sbjct 36960 TCTCCATTGGAATCCGTAAACAGGACC 36934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447887781509040