Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq39894 96.9 2e-15 seq18352 95.1 9e-15 seq38187 93.3 3e-14 seq37113 91.5 1e-13 seq2470 89.7 4e-13 >seq39894 Length=23042 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || ||||| ||| || || | || |||||| || Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || || ||| |||||| ||||||||||| |||| || | Sbjct 12638 GATACGATCGAAAAC--GTAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATC 12581 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || |||||||||||||||||||| |||| || | | |||||| | Sbjct 12580 AACAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATA 12521 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| || ||| | |||||||| || ||| | || || || Sbjct 12520 ATATTCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCGCGGTGG 12472 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||| || || ||| || || | || |||||| || Sbjct 11786 ATGCAGATTTTCGTAAAAACTCTCACCGGAAAAACCATCACTTTGGAAGTCGAA----CC 11731 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || ||| |||| || ||| |||||| || |||||||| | || | Sbjct 11730 GTCGGA-TACGATCGAAAACGTAAAAGCGAAAATACAAGATAAAGAAGGCATCCCACCCG 11672 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| ||||| || ||||| ||||||||||| |||| || | |||| |||| Sbjct 11671 ACCAGCAACGATTAATCTTCGCCGGTAAACAATTGGAAGACGGCCGTACCTTGAGTGATT 11612 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || |||||| ||| | || ||||| || ||| | ||||| || Sbjct 11611 ATAATATTCAGAAAGAGTCCACACTTCACTTGGTGTTACGTCTTCGTGGTGG 11560 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| || || || ||| |||||| | || || ||| | Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | ||| || ||| ||||| || || |||||| | || ||| Sbjct 11955 CGACACGATTGAAAAT--GTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGAC 11898 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | |||||||| ||||| ||||||||||| || | || | ||| ||| || Sbjct 11897 CAACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTAT 11838 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || || | ||| |||| | || || ||||| || Sbjct 11837 AATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 11788 >seq18352 Length=35742 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || |||||| | ||||| ||| ||||| | || || || || Sbjct 19990 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAG 20049 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| ||||| || |||||||| | || ||| Sbjct 20050 TGACACCATCGAAAAT--GTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGAC 20107 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| |||||||| ||||||||||| | || |||| | | | | || || ||| Sbjct 20108 CAGCAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTAC 20167 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || || | ||||||||| | |||||| | || || Sbjct 20168 AACATCCAAAAGGAATCTACGCTCCATTTGGTTCTTCGTTTGAGAGGAGG 20217 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || | ||||| ||| || || | || |||||| || | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || || ||||| |||||| |||||||| || |||| || ||| Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| ||||| |||||| | || || | |||| | || || || ||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCGGACTATAAC 19486 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || |||||||| |||| | || ||||| Sbjct 19487 ATTCAAAAAGAATCCACTCTCCACTTGGT 19515 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | || || ||| || || | || || || || Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || ||||| ||||| || ||||| ||| | || ||| ||| Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| ||||| |||||| | || |||| || | ||||| ||||||||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || | |||||||| | ||||| ||||| || Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTTACGTGGAGG 19989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| | || || ||| ||| || | || |||||| | | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | ||||| ||||| ||||| |||||| | || || || Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCAA 19654 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || || ||||| |||||| | || |||| | | | | | ||||| |||||| Sbjct 19655 CAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAAC 19714 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| |||| | || ||||| Sbjct 19715 ATCCAAAAAGAATCCACTCTCCACTTGGT 19743 >seq38187 Length=9425 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| || || || ||| || ||| | | ||||| | Sbjct 2986 ATGCAAATTTTCGTTAAAACGCTAACCGGTAAAACAATCACATTGAAAGTCGAGCCATGC 3045 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || ||||| |||||| || ||||||||| | || ||| || Sbjct 3046 GATACTATTGAAAACGTCAAGGCTAAAATACAGGATAAAGAAGGTATCCCACCGGATCAA 3105 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| ||||| || ||||| ||||||||| | |||| || | |||| |||||| ||| Sbjct 3106 CAACGATTAATCTTCGCCGGTAAACAATTGAAAGACGGCCGTACCTTGAGCGATTATAAC 3165 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || |||||||| ||| | |||||||| || ||| Sbjct 3166 ATTCAAAAAGAATCCACACTTCATTTGGTGTTACGT 3201 >seq37113 Length=2419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || ||||| ||||| |||||| | || || | ||| | | | |||||| Sbjct 768 GATCAGCAACGTTTGATTTTCGCCGGTAAACAACTCGAAGATGGACGTACCCTTTCCGAT 709 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||||| ||||||||||| || ||| | ||| | || || Sbjct 708 TACAACATCCAAAAAGAATCGACTTTGCATTTAGTATTGAGATTGAGAGGTGG 656 >seq2470 Length=523 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| || || || ||| ||||||| | || || ||| | Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | ||| || ||| ||||| || || |||||| | || ||| Sbjct 174 CGACACGATTGAAAAT--GTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGAC 117 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | |||||||| ||||| ||||||||||| || | || | ||| ||| || Sbjct 116 CAACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTAT 57 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || || | ||| |||| | || || ||||| || Sbjct 56 AATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355572436310439