Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18352 152 1e-31 seq39894 147 5e-30 seq2470 138 3e-27 seq38187 87.8 4e-12 seq37113 86.0 1e-11 >seq18352 Length=35742 Score = 152 bits (168), Expect = 1e-31 Identities = 155/201 (77%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||||||||||||||||| ||| || || |||||||| ||||| ||||| Sbjct 20415 GTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTTCTGCCATCTTCGAGCTGTTTGCCA 20356 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| ||||| ||||| || || ||||||| ||||| || || || || || || Sbjct 20355 GCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTAGCCTTG 20296 Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||||||||| || ||| || |||||||||||||| || ||||| || | Sbjct 20295 ACGTTTTCGATGGTATC---GCTAGGCTCGACCTCGAGAGTGATTGTTTTTCCGGTCAAG 20239 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | ||||||| Sbjct 20238 GTTTTCACGAAAATCTGCATT 20218 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||| |||||||||||||| || || | |||||| ||||| ||| Sbjct 19746 AGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCT 19687 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||||||||| |||||||||||||| || | |||||||||||| Sbjct 19686 TCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCC 19627 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || || || || ||||| || || ||||| ||| ||| || ||||| ||||| Sbjct 19626 TGAATTTTGGCCTTGACGTTCTCAATAGTGTC---GCTTGGTTCGACTTCGAGCGTGATA 19570 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | || || || || | ||||| Sbjct 19569 GTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 132 bits (146), Expect = 1e-25 Identities = 152/203 (75%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| ||||| || || | ||||| || || ||||| || ||||| || Sbjct 19275 GTCGACTCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACCGTCTTCGAGTTGCTTTCCG 19216 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | ||||| || || || || | ||||| || ||||| || || ||| Sbjct 19215 GCGAAAATCAAACGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTA 19156 Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| |||||||| |||| ||||||||||| |||||||| || || || | Sbjct 19155 ACGTTTTCAATGGTGTC---GCTTGGTTCAACCTCGAGGGTGATCGTTTTCCCAGTCAAC 19099 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 || ||||| || | ||||||||| Sbjct 19098 GTTTTTACGAAGATCTGCATTTT 19076 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || || ||||||||||| || || | |||||| || || ||||| ||||| Sbjct 20193 TGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCGAGCTGT 20134 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || | ||||| ||||| ||||| | ||||| || || ||||| || Sbjct 20133 TTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCTTGGATTTTG 20074 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||||||||||||| | || || || || || ||||| || || || Sbjct 20073 GCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAATCGTTTTGCCAGTT 20014 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 | ||| ||||| || | |||||| Sbjct 20013 AAAGTTTTTACGAAAATTTGCATT 19990 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || |||||||| ||||| ||||||| | || | || ||||| || || Sbjct 19965 TGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCGTCTTCGAGTTGT 19906 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || || ||||| ||||| ||||| | || || || || ||||| || Sbjct 19905 TTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTG 19846 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||||||||||||| | ||||| ||||| ||||| || || || || Sbjct 19845 GCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTGCCGGTT 19786 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | ||||| Sbjct 19785 AAAGTTTTAACGAAAATTTGCAT 19763 >seq39894 Length=23042 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||| | |||||||| || || ||||| || |||||||| || || Sbjct 12478 CGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTT 12537 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| || || || || ||||| | |||||||| ||||| |||| ||| Sbjct 12538 CGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCT 12597 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||| || ||| ||| ||||||||||| || || || ||| || || | | Sbjct 12598 TCTTTGTCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAA 12657 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || |||||||| | |||||| Sbjct 12658 GTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 138 bits (152), Expect = 3e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| ||||||||||| || || |||||||| | ||| || Sbjct 11565 ACGAAGACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAA-GG 11623 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||||| || || || |||||||| | ||||| ||||| || || | | Sbjct 11624 TACGGCCGTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGC 11683 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| || || || || || ||| ||||||||||| || || || ||| || || | Sbjct 11684 CTTCTTTATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCA 11743 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || ||||| |||||||| ||||| || | |||||| Sbjct 11744 AAGTGATGGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||| | |||||||| || || ||||| || |||||||| || || Sbjct 12022 CGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTA 12081 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| | ||| || || |||||||| | | ||| || ||||| |||| ||| Sbjct 12082 CGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCT 12141 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||| || ||| ||| ||||||||||| || || || || || || | | Sbjct 12142 TCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAA 12201 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || |||||||| || || || | ||||| Sbjct 12202 GTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || || || |||||||| ||||| || || || | ||||| Sbjct 12259 AGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTGAGTGTACGACCATCC 12318 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || ||||| || | ||||||||||| || || | |||||||| || Sbjct 12319 TCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTATCT 12378 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||||||||| || || ||||| || ||| || || | || ||||| Sbjct 12379 TGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGTT 12438 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || | || ||||| || | |||||| Sbjct 12439 TTTCCTGTCAATGTTTTTACGAAAATTTGCATT 12471 >seq2470 Length=523 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||| | |||||||| || |||||||| || |||||||| || || Sbjct 241 CGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTA 300 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| | ||| || || |||||||| | | ||| || ||||| |||| ||| Sbjct 301 CGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCT 360 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||| || ||| ||| ||||||||||| || || || || || || | | Sbjct 361 TCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAA 420 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || |||||||| || || || | ||||| Sbjct 421 GTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq38187 Length=9425 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 210887 ATTTC--AACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC- 210943 ||||| ||| ||| | || || | ||||| ||||| |||||||| ||||||||||| Sbjct 3215 ATTTCGAAACAAAGACGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCG 3156 Query 210944 CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGG 211003 | ||| ||| | || |||| || || || || |||||||| | |||||||| || || Sbjct 3155 CTCAA-GGTACGGCCGTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGG 3097 Query 211004 AGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 || | ||||| || ||||| || || || |||||||| || || || Sbjct 3096 TGGGATACCTTCTTTATCCTGTATTTTAGCCTTGACGTTTTCAATAGTATC 3046 >seq37113 Length=2419 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || |||||||||||||| ||||| | |||||| | ||||||||| || || || || Sbjct 685 AGTCGATTCTTTTTGGATGTTGTAATCGGAAAGGGTACGTCCATCTTCGAGTTGTTTACC 744 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||| || | ||||| || |||||||||| Sbjct 745 GGCGAAAATCAAACGTTGCTGATCAGGAGGAA 776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158159064238805