Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq18352 109 5e-19 seq39894 104 2e-17 seq2470 104 2e-17 seq38187 84.2 2e-11 >seq18352 Length=35742 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||||| ||| |||||||| || |||||||| | ||| |||| | Sbjct 20433 CGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTTCTGCCA 20374 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||||||||| || || |||||||| ||||| |||| || | || ||||| Sbjct 20373 TCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCTTCTTTA 20314 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||||| |||| | | | |||||||| | ||| || || | ||||| Sbjct 20313 TCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACCTCGAGAGTGATT 20254 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| ||||| || || || ||||| Sbjct 20253 GTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||| | ||| || | ||||||||||| || ||||||| Sbjct 20004 ACGAAAATTTG--CATTCCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTT 19947 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| | | |||||| |||| || || ||||| || || || || |||| Sbjct 19946 GAATGTTGTAATCCGACAATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGAC 19887 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | |||||||| | || | | |||||| || |||||| |||| | | | | Sbjct 19886 GTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGG 19827 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || || | ||| || || | ||||| |||| || || | |||||||| || |||| Sbjct 19826 TGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTT 19767 Query 39281 GCAT 39284 |||| Sbjct 19766 GCAT 19763 >seq39894 Length=23042 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| |||||||| || || || ||||| |||||||||||| || ||||| || Sbjct 12484 CGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCG 12543 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| || ||||| || | || || || || | || | || |||||| Sbjct 12544 TCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTG 12603 Query 39190 TCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| ||| || ||| | | | | ||||||| || || || |||| ||||| Sbjct 12604 TCC-TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGAT 12662 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || |||||||| ||||| || ||||| Sbjct 12663 GGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| |||||||| || || || ||||| |||||||||||| || || || | Sbjct 12028 CGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCA 12087 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || || || || | | ||||| || | || | || |||||| Sbjct 12088 TCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTG 12147 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| ||| || || | || | | | ||||||| || ||| || |||| ||||| Sbjct 12148 TCC-TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGAT 12206 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || |||||||| ||||||||||| Sbjct 12207 GGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC-GGCAAGTGTTCGTTC 39128 ||||||||||| || || ||| |||||| || ||||||||||| |||| || || | Sbjct 11572 CGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAG-GTACGGCC 11630 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || | ||||| || || || || | || |||||||||| || | || ||||| Sbjct 11631 GTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTT 11690 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || |||||| ||| | | | | |||||| || || || |||| ||||| Sbjct 11691 ATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGAT 11750 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || ||||| || || || ||||| Sbjct 11751 GGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 >seq2470 Length=523 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| |||||||| || || |||||||| |||||||||||| || || || | Sbjct 247 CGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCA 306 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || || || || | | ||||| || | || | || |||||| Sbjct 307 TCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTG 366 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| ||| || || | || | | | ||||||| || ||| || |||| ||||| Sbjct 367 TCC-TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGAT 425 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || |||||||| ||||||||||| Sbjct 426 GGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq38187 Length=9425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128 |||||||||||||| || ||| |||||||| || ||||||||| |||| || || | Sbjct 3200 CGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAG-GTACGGCC 3142 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| | | ||||| || || || || | || || || || |||||| || |||| Sbjct 3141 GTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCT-TCTT 3083 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 | ||| ||||| |||| | | | ||||||| | ||| || | || |||| Sbjct 3082 TATCCTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGA 3023 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || || ||||||||||| || |||||||| Sbjct 3022 TTGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429195597788441