Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq18352 167 2e-36 seq39894 145 5e-30 seq38187 136 3e-27 seq2470 114 9e-21 seq37113 93.3 3e-14 >seq18352 Length=35742 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| | || || ||||||||||| ||||| ||||| | Sbjct 19076 AAAATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACCA 19135 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | ||| |||||| || ||||||||| ||||||||||| Sbjct 19136 AGCGACACCATTGAAAACGTTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGAT 19195 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||||| || || ||||| || ||||| ||||||| | || || || ||| Sbjct 19196 CAGCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCAGACTAC 19255 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||||||||| || |||||||| ||| | | || |||||||| Sbjct 19256 AACATTCAAAAAGAGTCGACCTTACATTTGGTTCTCCGATTACGAGGAGG 19305 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| | || || ||||| ||||| ||||||||||| ||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| || ||||| ||| | || || || || Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| |||||||| ||||||| || || || ||||||||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| || || ||||||| || | | || || |||||| Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTTACGTGGAGGA 19990 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || ||||||||||| |||||||| || ||| Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || ||||||| |||||||| || | || || || || Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || ||| | || || |||||||||||||| ||||| | || |||||| | || || | Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCG--GACTATA 19484 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| |||||||| ||||| Sbjct 19485 ACATTCAAAAAGAATCCAC 19503 Score = 120 bits (132), Expect = 2e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||| | || |||||||| ||||||||||| || || | | Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || |||||| || |||||||| | || || ||||| Sbjct 20278 CGATACCATCGAAAACGTCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 20337 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 || ||| | || || || |||||||| || ||||| ||||| |||| | |||| Sbjct 20338 GCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACG--CTTTCG--GATT 20393 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | ||||| |||||||| || || |||||||| || || Sbjct 20394 ATAACATCCAAAAAGAATCTACGTTACATTTGGTATT 20430 >seq39894 Length=23042 Score = 145 bits (160), Expect = 5e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| |||||||| |||||| | ||||| || | | Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| ||||||| ||||||||||| | || || |||||| Sbjct 12638 GATACGATCGAAAACGTAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 12579 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || |||||||| |||||| ||||||||| || ||| | ||||||| || Sbjct 12578 CAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAAT 12519 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || ||||| || || || | ||||| || ||| Sbjct 12518 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTA 12486 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| ||||| |||||||| |||||| | ||||| || | || Sbjct 11786 ATGCAGATTTTCGTAAAAACTCTCACCGGAAAAACCATCACTTTGGAAGTCGAACCGTCG 11727 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| ||||| || |||||||| | || || || || Sbjct 11726 GATACGATCGAAAACGTAAAAGCGAAAATACAAGATAAAGAAGGCATCCCACCCGACCAG 11667 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || ||||| || ||||| |||||| ||||||||| || || || | ||||| || Sbjct 11666 CAACGATTAATCTTCGCCGGTAAACAATTGGAAGACGGCCGTACCTTGAGTGATTATAAT 11607 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || |||||||||||| | || || || ||| Sbjct 11606 ATTCAGAAAGAGTCCACACTTCACTTGGTGTTA 11574 Score = 114 bits (126), Expect = 9e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| ||||| |||||||| || || | ||||| || | | Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||| |||||| || || |||||| | || || || || Sbjct 11955 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 11896 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| || |||||||||||| ||||||| | || || || |||| || || Sbjct 11895 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAA 11836 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 11835 TATCCAAAAGGAATCAAC 11818 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| ||||| || || || |||||| | ||||| || | | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| ||||||| ||||||||||| | || || ||||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || ||||| ||||| | ||||| | || ||| | ||||||| || Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 12063 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || ||||| || || || | ||||| || ||| Sbjct 12062 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTA 12030 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||||||||| ||||| || || || |||||| | || || || | Sbjct 12929 AAGATGCAGATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGCCG 12870 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | ||| ||||| || || |||||| | || || || Sbjct 12869 TCCGACACGATCGAGAACGTGAAAGCTAAAATCCAGGATAAGGAAGGTATCCCACCGGAC 12810 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | ||||| || |||||||||||| ||||||| | || || || |||| || Sbjct 12809 CAACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACGTTGAGCGACTAT 12750 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || ||||| || || || Sbjct 12749 AATATTCAAAAGGAATCAAC 12730 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| | || ||||||||||| || | ||||| || | | Sbjct 12471 AATGCAAATTTTCGTAAAAACATTGACAGGAAAAACGATTACGTTAGAAGTCGAACCATC 12412 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | ||| |||||| || || |||||| | || || || || Sbjct 12411 CGACACGATTGAGAACGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCCGACCA 12352 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || || ||||| ||||| || || || | || || | |||| || || Sbjct 12351 ACAACGATTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGTACACTCAGCGACTATAA 12292 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 12291 TATCCAAAAGGAATCAAC 12274 >seq38187 Length=9425 Score = 136 bits (150), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| || || || ||||| ||||| | |||| || ||| | Sbjct 2986 ATGCAAATTTTCGTTAAAACGCTAACCGGTAAAACAATCACATTGAAAGTCGA-GCCATG 3044 Query 23671 -GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | || ||||| || ||||||||| | || || ||||| Sbjct 3045 CGATACTATTGAAAACGTCAAGGCTAAAATACAGGATAAAGAAGGTATCCCACCGGATCA 3104 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || ||||| || ||||| |||||| || |||||| || || || ||||||| || Sbjct 3105 ACAACGATTAATCTTCGCCGGTAAACAATTGAAAGACGGCCGTACCTTGAGCGATTATAA 3164 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| |||||||| |||||| | ||||| || ||| Sbjct 3165 CATTCAAAAAGAATCCACACTTCATTTGGTGTTA 3198 >seq2470 Length=523 Score = 114 bits (126), Expect = 9e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| ||||| |||||||| || || | ||||| || | | Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||| |||||| || || |||||| | || || || || Sbjct 174 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 115 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| || |||||||||||| ||||||| | || || || |||| || || Sbjct 114 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAA 55 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 54 TATCCAAAAGGAATCAAC 37 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| ||||| || || || |||||| | ||||| || | | Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| ||||||| ||||||||||| | || || ||||| Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 342 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || ||||| ||||| | ||||| | || ||| | ||||||| || Sbjct 341 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 282 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| || || | ||||| || ||| Sbjct 281 ATTCAAAAAGAATCGACTCTTCATTTGGTCTTA 249 >seq37113 Length=2419 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || ||||| || ||||| || || ||||| |||||||| ||||| | ||| || | Sbjct 774 CCTCCTGATCAGCAACGTTTGATTTTCGCCGGTAAACAACTCGAAGATGGACGTACCCTT 715 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||||||| |||||||| || || || |||||||| || || ||| |||| || Sbjct 714 TCCGATTACAACATCCAAAAAGAATCGACTTTGCATTTAGTATTGAGATTGAGAGGTGG 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337734183123356