Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq39894 154 4e-32 seq18352 149 1e-30 seq2470 140 8e-28 seq27679 131 4e-25 seq62430 93.3 1e-13 seq38187 87.8 4e-12 >seq39894 Length=23042 Score = 154 bits (170), Expect = 4e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| || ||||| ||||||| ||| || ||| | || | ||||| Sbjct 12259 AGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTGAGTGTACGACCATCC 12318 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || | ||||||||||||||| || ||||||||||| ||| Sbjct 12319 TCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTATCT 12378 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || ||||| || || ||||| || | ||| || |||||||| ||||| Sbjct 12379 TGAAT-TTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGT 12437 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| ||||||| ||| | ||||||| Sbjct 12438 TTTTCCTGTCAATGTTTTTACGAAAATTTGCATT 12471 Score = 140 bits (154), Expect = 8e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| || ||||| ||||||| ||| || ||| ||| || | |||||| Sbjct 11803 AGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCT 11862 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || ||||| || | || ||||||||| || || ||||||||||| ||| Sbjct 11863 TCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCT 11922 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || |||||| ||| || ||||| || | ||| || || ||||| || || Sbjct 11923 TGAAT-TTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTACTTCCAACGTAATAGT 11981 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||||||| ||| | ||||||| Sbjct 11982 TTTTCCTGTGAGCGTTTTTACGAAAATTTGCATT 12015 Score = 131 bits (144), Expect = 4e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| || ||||| ||||| | ||| || ||| ||| || | |||||| Sbjct 12715 AGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTCAACGTACGGCCATCT 12774 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || ||||| || | || ||||||||| || || ||||||||||| || Sbjct 12775 TCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCC 12834 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || ||||| ||||| ||||| || | || || || || ||||| || Sbjct 12835 TGGAT-TTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTGATGGT 12893 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || | |||||| | ||| | ||||| || Sbjct 12894 CTTGCCGGTGAGAGTTTTAACGAAGATCTGCATCTT 12929 >seq18352 Length=35742 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||||||||||||||||||||| ||||| |||| | ||||| || ||| Sbjct 19746 AGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCT 19687 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||||||||| ||||||||||| || || |||||||||||||| Sbjct 19686 TCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCC 19627 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| || || || ||||| | ||| || || | |||||| || Sbjct 19626 TGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTT 19567 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | ||| | |||||| Sbjct 19566 TTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||||||||||||||||||| | || || || | | || | |||||| Sbjct 19518 AGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCT 19459 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || || ||||| |||||||| ||||| || || |||||| Sbjct 19458 TCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCT 19399 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || ||| ||| ||| ||| || ||||| || ||| || || | ||||||||| Sbjct 19398 TGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTT 19339 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | |||||| Sbjct 19338 TTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||| ||||||| ||||| || | | ||||| || ||||| ||||| Sbjct 20193 TGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCGAGCTGT 20134 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || | ||||| ||||| || || || ||||| || |||||||| || Sbjct 20133 TTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCTTGGATTTTG 20074 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| |||||||||||| || || || || | || ||||| ||||| || Sbjct 20073 GCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAATCGTTTTGCCAGTT 20014 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 |||||||||| ||| | ||||||| Sbjct 20013 AAAGTTTTTACGAAAATTTGCATT 19990 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||||||||| | |||||||| | ||| |||| || ||||| || || Sbjct 19965 TGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCGTCTTCGAGTTGT 19906 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || || ||||| ||||| || || ||||| || || |||||||| || Sbjct 19905 TTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTG 19846 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || |||||||||||| || || || || | ||||| || ||||| || Sbjct 19845 GCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTGCCGGTT 19786 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| | |||||| Sbjct 19785 AAAGTTTTAACGAAAATTTGCAT 19763 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | || | || ||||||||||||| || ||||| | | ||| Sbjct 20439 CGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTT 20380 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 20379 CTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCT 20320 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| || || ||| || ||||||||| || | || || || | Sbjct 20319 TCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACCTCGAGA 20260 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || ||||| ||||| | ||| | |||||| Sbjct 20259 GTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATT 20218 >seq2470 Length=523 Score = 140 bits (154), Expect = 8e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| || ||||| ||||||| ||| || ||| ||| || | |||||| Sbjct 22 AGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCT 81 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || ||||| || | || ||||||||| || || ||||||||||| ||| Sbjct 82 TCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCT 141 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || |||||| ||| || ||||| || | |||||| || || || || || Sbjct 142 TGAAT-TTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACTTCCAATGTAATAGT 200 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||||||| ||| | ||||||| Sbjct 201 TTTTCCGGTGAGCGTTTTTACGAAAATTTGCATT 234 Score = 132 bits (146), Expect = 1e-25 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | | ||| | || ||||| ||||||||||| | ||| |||||| | ||| Sbjct 241 CGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTA 300 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||| ||| || || |||||||| | || ||| || || || ||||| ||| Sbjct 301 CGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCT 360 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || || |||||| || || |||||| || || || | || || || || Sbjct 361 TCTTTGTCCTGAAT-TTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAA 419 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | |||||| | ||| | |||||| Sbjct 420 AGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq27679 Length=10833 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | |||||| || | || ||| || |||||||| | ||||| |||||||||| Sbjct 2200 CTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGA 2141 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | ||||| ||||| || || || |||||||| ||||||||||| ||||| ||| || Sbjct 2140 TCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTT 2081 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | || | ||||||| ||| || || | || || || || || ||||| ||||| | || Sbjct 2080 CAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACGA 2021 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 2020 AAATCTGCAT 2011 >seq62430 Length=23789 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||||| ||||||||||| | ||||| |||||||| || || || ||| Sbjct 14389 GTAGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCGTCCATCTTCGAGTTGTTTACCA 14330 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| || | |||||||| || || ||||||||| Sbjct 14329 GCGAAAATCAAACGTTGTTGATCAGGAGGAATACCT 14294 >seq38187 Length=9425 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||||||||| | || |||||| ||| || | || |||| | || Sbjct 3188 TGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTCTTTCAATTGT 3129 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | ||||||||| || || || |||||||| || || || || || Sbjct 3128 TTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATCCTGTATTTTA 3069 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||| || || || | | || || | || ||||| || || || || Sbjct 3068 GCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTGTTTTACCGGTT 3009 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | |||||| Sbjct 3008 AGCGTTTTAACGAAAATTTGCAT 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191509671438758