Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq39894 86.0 5e-12 seq27679 84.2 2e-11 >seq39894 Length=23042 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 |||||||| ||||| ||||| || ||| || || | |||||||||||||||||| Sbjct 11818 GTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCCAATTGTTTGCCG 11877 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 || | || | ||||||||||| || | ||||| || || |||||| |||| Sbjct 11878 GCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCTTGAATTTTGGCTTTC 11937 Query 101162 ACATCGGCCACCGTCTCTG-TGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 |||| | | ||| || | ||| | || | || ||||||||||| || || | || Sbjct 11938 ACATTTTCAATCGTGTCGGATGGTTCTACTTCCAAC-GTAATAGTTTTTCCTGTGAGCGT 11996 Query 101221 TTTAATAAAAATTTGCATT 101239 ||| | |||||||||||| Sbjct 11997 TTTTACGAAAATTTGCATT 12015 >seq27679 Length=10833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 101049 CTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATA 101108 |||| ||||||||||| || | || ||| || |||||||||||| || || || | | Sbjct 2200 CTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGA 2141 Query 101109 TAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGG 101168 | | | ||| ||||| || | |||||| || || || || || || |||| Sbjct 2140 TCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTT 2081 Query 101169 CCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAAT 101226 | | || |||| || ||| ||||| |||||||||||| || ||||||||||| | Sbjct 2080 CAATCGAATCTGAGG--GTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCAC 2023 Query 101227 AAAAATTTGCAT 101238 ||||| ||||| Sbjct 2022 GAAAATCTGCAT 2011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409327000314963