Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq24804 141 8e-29 seq47140 131 1e-25 >seq24804 Length=9356 Score = 141 bits (156), Expect = 8e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 4821 TAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAAT 4880 |||||||| || | || ||||||||||| ||||||| ||| || |||| || |||||| Sbjct 6683 TAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAAT 6624 Query 4881 CCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTT 4940 ||||| || |||| ||||| | | ||||||||| | | | || | ||| |||| ||| Sbjct 6623 CCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATTT 6564 Query 4941 TCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGT 5000 || || || ||||| ||| ||| || ||||| || ||||| || || ||||| | || | Sbjct 6563 TCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTTCTTT 6504 Query 5001 TCGTCAGGCTTAAGTTTTTTCCA 5023 || || || |||||||| | ||| Sbjct 6503 TCTTCGGGTTTAAGTTTCTCCCA 6481 Score = 125 bits (138), Expect = 6e-24 Identities = 165/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||| |||||||| ||| || || ||||| ||||||| |||| ||||| Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| |||||||| ||||||||||| || ||||| || || ||||||| Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 4690 CTACTAATCGGGACCCGAACGAGCTGGC--TTTG-TCTTTAATCCATTTTAATGCCCAGT 4746 ||| | || || || | |||| |||| || ||||||||| | ||||| | Sbjct 6881 CTATGATTCTTTCTCCAAAAG---TGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAAT 6825 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 ||||| |||| || || || || || | |||||||| ||||| Sbjct 6824 CTGCTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAA 6779 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 ||||||||| | ||||||||||| ||||| |||||||| |||| | |||||||||| | Sbjct 6392 ACTTCTTCAGCTGTCCAAAACGAGGCTTCTGCTTTTTTAAACATGGCCCAAATATCATCA 6333 Query 5109 TACTGAATCGGAAGTATGACAAATCTG 5135 |||| ||||| | ||| || |||||| Sbjct 6332 TACTTGATCGGCATTATTACGAATCTG 6306 >seq47140 Length=38879 Score = 131 bits (144), Expect = 1e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 4802 TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 ||||| ||||||| | ||||| || || | || ||| |||||||| ||||||| ||| Sbjct 14428 TTCAATAGGGTCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATT 14369 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 ||| |||| || ||||||||||| ||| ||| ||||| | | ||| || || | | | Sbjct 14368 TTCAATAGTGATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAA 14309 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 || | ||| ||||| || || || || ||||| || ||||| ||||||||||| || Sbjct 14308 GAAACGTTCGACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATAC 14249 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || || || || | || ||| || || || ||||| | ||| Sbjct 14248 GTGCGAAATGAACTTCTTTTCTTCTGGTTTCAGTTTCTCCCA 14207 Score = 120 bits (132), Expect = 3e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||| || | ||| ||| || || ||||| ||||| | ||||||||| | Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCT 14672 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| || ||||| || |||||||| || ||||| || || ||||||| Sbjct 14671 TGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACG 14612 Query 4690 CTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 ||| || | || || | ||| | || ||| |||||| | |||||||| | Sbjct 14611 CTATTATCCTTTCTCCAAAAGTAGC-GTTTTGGTCAGCTATCCATCTCAATGCCCAATCT 14553 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 |||||| |||| ||||| || ||||| | |||||||| |||| Sbjct 14552 GCTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATA 14510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426701631578381