Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7785 141 7e-29 >seq7785 Length=64017 Score = 141 bits (156), Expect = 7e-29 Identities = 237/341 (70%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 27213 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 27272 |||||||||||| |||||||| ||||| | ||||| || ||||| || || ||||| || Sbjct 37263 GGTGACGTGAGCGATCATGTAAGTGAGCAAGGAGTAACTAGCGATATTGAATGGTACGCC 37204 Query 27273 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTA 27332 | ||||| || | || | ||| || | || || || | || || | | |||| Sbjct 37203 TAAACCCATATCAGCAGAACGCTGATACATTTGGCATGACAATTCACCGTTTACTGCGTA 37144 Query 27333 AAACTGACATATGGCGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGTTC 27390 |||||| || | || || ||||| | |||| | ||| || ||| |||||| Sbjct 37143 AAACTGTACTAAGCAATGACAAGGAGGTAAGGCCATTTTAGG--TAAATCTAGAGGGTTC 37086 Query 27391 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 27450 || || || | ||| || || || |||||||| ||||| ||| || | | ||||| Sbjct 37085 CACGCACATAAGATTATTCGTCTACAGTCTGGGTTATTCCTAATGGTATCTATGACGTTT 37026 Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCG 27510 || || |||||||| || | || ||| || |||||| ||||||| |||||| Sbjct 37025 TGTAGTTGATCCACTCCTTTGTTCGTGTAATCGGTGTGCATGTCTTTGTACTCAGCTCCG 36966 Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 ||||| ||||||||||| ||||| || || || || || || Sbjct 36965 AAATGTCTCCATTGGAATCCGTAAACAGGACCGAGATCACC 36925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369206118258767