Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq24804 131 2e-25 seq47140 116 5e-21 seq28943 113 6e-20 seq7785 87.8 2e-12 >seq24804 Length=9356 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| ||||||||||| || || || | |||||||||||| || || | ||| ||||| | Sbjct 6693 ATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGT 6634 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || ||||||||||| ||| |||| ||||| | || || || || | | || ||||| Sbjct 6633 GATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTC 6574 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | | ||| ||||| || || |||||| ||||| ||||||||||| || ||| ||| Sbjct 6573 GACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAAT 6514 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 ||| | ||||| | || | ||||| | ||| || ||| ||| Sbjct 6513 AAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 131 bits (144), Expect = 2e-25 Identities = 171/232 (74%), Gaps = 11/232 (5%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||| ||||| || | ||| ||| || || | || |||||||| || || |||| Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 |||||||||||||||| || ||| |||||||||||| || ||||| || || ||||| | Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC--CA--CCGTT---GTGCCCAA 48335 | | | ||| ||||| || ||| |||| || ||| || || || | |||||| Sbjct 6881 CTATGATTCTTTCTCCAAAAGTGG---CGTTTTG-ATCAGCAATCCATTTCAGAGCCCAA 6826 Query 48336 TCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 || || ||| |||| ||||||||||| ||||| ||||| || || | ||||| Sbjct 6825 TCTGCTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAAAAGT 6774 Score = 89.7 bits (98), Expect = 7e-13 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 ||| || || |||||||| ||||| | ||||| | ||||| ||||||||| || | Sbjct 7261 TCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATCGA 7202 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC--ACTATTATC 48089 ||||||| ||| || || | ||| |||||||| || ||||||| || | || | || Sbjct 7201 TACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATTTC 7142 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | | | | ||| |||| ||| | | |||||||| ||||| |||||||||||| Sbjct 7141 GGTAATTTC--TTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCAAAA 7084 Query 48150 TC 48151 || Sbjct 7083 TC 7082 >seq47140 Length=38879 Score = 116 bits (128), Expect = 5e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||| ||||||||||| || || | || |||||||| || || | ||||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 || ||||||||||| || ||| ||||| | || |||||||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 | ||||||||||| || || ||||| || || ||||| || ||||| || ||| Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 48582 AAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || | ||||| | | ||||||| | ||| || ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 113 bits (124), Expect = 6e-20 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||| ||||| |||||||| ||| || || | || ||||| || || | || | Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCT 14672 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 ||||||||||||| ||||| ||| ||| |||||||| || ||||| || || ||||| | Sbjct 14671 TGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACG 14612 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAG 48339 | | | || ||||| || | || || || |||||| | ||||||||| | Sbjct 14611 CTATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTG 14552 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | || |||| || |||||||||||||| ||||| || || || || Sbjct 14551 CTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAGGAA 14506 >seq28943 Length=35018 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| || || |||| | ||| || ||||| ||||||||||| | |||| Sbjct 13244 TGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAAAGAT 13303 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||| |||||||||||||| |||||||| ||||||||||| | | | | Sbjct 13304 TCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAGTGAA 13363 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 ||||||| ||||| | | | ||||| ||||| Sbjct 13364 TTTCTGACACCATATTGTTTTATTTTTTCTTT 13395 Score = 105 bits (116), Expect = 9e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT 78476 || ||||| |||||||| || || |||| || | || ||| || |||||||| |||| Sbjct 14950 GTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGCG 15009 Query 78477 TCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || || || | |||||||| || || || | ||||||||| ||||| |||| ||| Sbjct 15010 TCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTTC 15068 Query 78536 AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 |||| ||| ||||||||||| || || || ||||| ||||| Sbjct 15069 AACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 >seq7785 Length=64017 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 ||||||| || |||||||| || || || | || ||||| || || || |||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 76909 TCATCGACT----GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATG 76964 ||| ||| |||| |||||||||| || |||||||| || |||||||| | |||| Sbjct 7380 TCAA--ACTTTGTGACT--GATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATG 7435 Query 76965 GTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 77011 ||||| || ||||||||||| |||||| ||| | ||| | ||| Sbjct 7436 GTCTTCTGTTTAATTTCCCAAACAGTTTTATAAAGGTCTTTCAAATC 7482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694088256600480