Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq24804 143 4e-29 seq47140 132 7e-26 seq28943 116 5e-21 seq7785 93.3 6e-14 >seq24804 Length=9356 Score = 143 bits (158), Expect = 4e-29 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| ||||| || || || || || | |||||||||||||||||| | || ||||||| Sbjct 6693 ATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGT 6634 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||||||||| ||| |||| ||||||| ||| || || ||| | | || ||||| Sbjct 6633 GATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTC 6574 Query 47010 AGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 ||| | ||| ||||| || || |||||| ||||| |||||||| || || ||| || Sbjct 6573 -GACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAA 6515 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 |||| | ||||| |||| | ||||| | ||| || ||| ||| Sbjct 6514 TAAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 143 bits (158), Expect = 4e-29 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||| ||||| || | ||| ||| || || | ||||||||||| || ||||||| Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 ||||||||||||| || || ||| |||||||||||| || ||||| ||||| || || | Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 46772 CGACAAGTCTCTCTCCGTAACTGGC---ATCATTATGAATCCACCTTTGAGCCCAATCAG 46828 | | | ||| ||||| || |||| | || | |||||| | |||||||||| | Sbjct 6881 CTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTG 6822 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 | || |||| ||||||||||| ||||| ||||| || || | ||||| Sbjct 6821 CTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAAAAGT 6774 Score = 107 bits (118), Expect = 3e-18 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 ||| || || |||||||| ||||| || ||||| | ||||| ||||||||| || | Sbjct 7261 TCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATCGA 7202 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CG-ATATTATC 46578 || |||| ||| || || | ||| ||||||||||| ||||||| || || ||| | || Sbjct 7201 TACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATTTC 7142 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | || | | ||| |||| ||| || | |||||||| ||||| |||||||||||| Sbjct 7141 G--GTAATTTCTTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCAAAA 7084 Query 46639 TC 46640 || Sbjct 7083 TC 7082 >seq47140 Length=38879 Score = 132 bits (146), Expect = 7e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||| || || ||||| || || | || |||||||| ||||| | |||||||||| Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || ||||||||||| || ||| ||||||| ||| ||||||||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTC- 14300 Query 47011 GAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||| ||||||||||| || || ||||| || || ||||| |||||||| || ||| Sbjct 14299 GACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAAT 14240 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 || | ||||| || | ||||||| | ||| || ||| ||| Sbjct 14239 GAACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||| ||||| |||||||| ||| || || | |||||||| || || | ||| | Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCT 14672 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 ||||||||||||| ||||| ||| ||| |||||||| || ||||| ||||| || || | Sbjct 14671 TGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACG 14612 Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAG 46828 | | | || ||||| || | || | | | | ||||| || |||||||| | Sbjct 14611 CTATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTG 14552 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | ||| |||| || |||||||||||||| ||||| || || || || Sbjct 14551 CTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAGGAA 14506 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 |||||||||||||||||||| || || |||||||||||| |||| ||| || ||| | Sbjct 14100 ACTTCTTCAGCTGTCCAGAACGAAGCTTCTGCTTTTTTAAACATGGCCCAAATGTCATCA 14041 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 |||| |||||| | || ||||||||| |||||| Sbjct 14040 TATTTGATCGGCATGATTACAAATCTACGAGGATTT 14005 >seq28943 Length=35018 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| || || |||| || ||| || ||||| ||||||||||| | |||| Sbjct 13244 TGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAAAGAT 13303 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || ||||| |||||||||||||| |||||||| ||||||||||| | | | | Sbjct 13304 TCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAGTGAA 13363 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 ||||||| ||||| | | | ||||| ||||| Sbjct 13364 TTTCTGACACCATATTGTTTTATTTTTTCTTT 13395 Score = 114 bits (126), Expect = 2e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 |||||||| ||||| ||||| || |||| || | || ||| || |||||||| |||| Sbjct 14950 GTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGCG 15009 Query 77072 TCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || ||||| || | |||||||| ||||| || | ||||||||| ||||| |||||||| Sbjct 15010 TCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTTC 15068 Query 77131 TACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 || ||| ||||||||||| || || || ||||| ||||| Sbjct 15069 AACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 76495 TCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGG 76554 || ||| || | | | ||||| | || ||||| ||||||||| ||| | | |||||| Sbjct 14303 TCGTTCTTACTTTTTGTATAAACTGTCGAATTCTTCTCCCCAACAATCTTGAAGACCAGG 14362 Query 76555 ACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAG 76614 ||||| | | || ||||| | ||| | | |||| | || || |||||| Sbjct 14363 ACATTGACTAGGGCACATAAGACTCCATTTTTCTTCTTTTTCTACACGCCGCATAAACTC 14422 Query 76615 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATT 76674 ||| |||||||||| ||| ||||| ||| | | |||| |||||| | || ||||| Sbjct 14423 ATCCGGTATCCATAACGCATAAAATAAATCCCTAGCTCTAATTTCTTCGTGGCCGGTATT 14482 Query 76675 CTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 || | ||||| ||| || | ||||| | ||||| ||||| ||||| Sbjct 14483 TTTACGTAAATCTAAGAAGTCAAAGATATCGGCGTGCCAAGGTTCAAGATA 14533 >seq7785 Length=64017 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/167 (73%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 ||||||| || |||||||| || || || | || |||||| || || || |||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 75504 TCATCGACT----GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATG 75559 ||| ||| |||| |||||||||| || |||||||| || |||||||| | |||| Sbjct 7380 TCAA--ACTTTGTGACT--GATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATG 7435 Query 75560 GTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606 ||||| || ||||||||||| |||||| ||| | ||| | ||| Sbjct 7436 GTCTTCTGTTTAATTTCCCAAACAGTTTTATAAAGGTCTTTCAAATC 7482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712338591810240