Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18352 120 7e-22 seq39894 118 2e-21 seq2470 114 3e-20 seq27679 95.1 3e-14 >seq18352 Length=35742 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| | || ||||| || ||||||||||||||||| |||| | ||| Sbjct 19755 CTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTT 19696 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || ||| |||||||||||||| | || ||||| | | || ||| Sbjct 19695 CTTCCGTCTTCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCT 19636 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || |||||||| ||||| |||| | |||| || ||||| || Sbjct 19635 TCCTTGTCCTGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGC 19576 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || | || |||||||| | ||||| Sbjct 19575 GTGATAGTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 116 bits (128), Expect = 9e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || ||||| || |||||||||||||| || | | ||||| || ||| Sbjct 20202 AGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCT 20143 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || | | |||||||||| | || ||||| || ||| Sbjct 20142 TCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCT 20083 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| | || | | |||| ||| ||||||||| || ||||| Sbjct 20082 TGGATTTTGGCCTTGACATTTTCGATGGTGTC---ACTGGGCTCTACTTCCAGGGTAATC 20026 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || | ||| || ||||| | |||||| Sbjct 20025 GTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 19990 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| | || ||||| || |||||||| ||||| || || | | || Sbjct 19527 CTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTG 19468 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| |||||||| || || | |||||||| | | ||||| Sbjct 19467 CGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCC 19408 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||||||| |||||| | |||| |||| || ||||| || Sbjct 19407 TCTTTGTCTTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGC 19348 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || | ||||||||||| | ||||| Sbjct 19347 GTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || |||||||| ||||||||||| | || |||| || ||| Sbjct 19974 AGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCGTCT 19915 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || || | |||||||||| | ||| || || || ||| Sbjct 19914 TCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCT 19855 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||| | || | | |||| ||| ||| ||||| || || || Sbjct 19854 TGGATTTTGGCCTTGACGTTTTCGATGGTGTC---ACTGGGCTCAACTTCGAGGGTGATG 19798 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || | ||| || ||||| | ||||| Sbjct 19797 GTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||||||||| ||||| | | ||||| |||||||| || ||| || Sbjct 20415 GTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTTCTGCCATCTTCGAGCTGTTTGCCA 20356 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| ||||| | ||||| || | | || ||||| || ||||||||||| ||| Sbjct 20355 GCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTAGCCTTG 20296 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | | || | ||| || || ||||| || ||||| || || | || Sbjct 20295 ACGTTTTCGATGGTATCGCTAGGCTCGACCTCGAGAGTGATTGTTTTTCCGGTCAAGGTT 20236 Query 152088 TTCACGAAGACCTGCATT 152105 |||||||| | ||||||| Sbjct 20235 TTCACGAAAATCTGCATT 20218 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || | ||| | || ||||||||||| |||||||| || | || ||||| || Sbjct 19294 TCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACC 19235 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || ||||| |||||||| || | | ||||| || | || || ||||| Sbjct 19234 GTCTTCGAGTTGCTTT--CCGGCGAAAATCAAACGTTGCTGATCTGGCGGTATACCTTCT 19177 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||||||| ||| || | || | | |||| || || || || || Sbjct 19176 TTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAACCTCGAGGGTG 19117 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || | || || ||||||| ||||||||| Sbjct 19116 ATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTT 19076 >seq39894 Length=23042 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || || || |||||||| || || ||| || || | |||||| Sbjct 11803 AGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCT 11862 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| |||||||| || | || || ||||||| | ||| |||||||| ||| Sbjct 11863 TCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCT 11922 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| ||| | || | |||| || |||||||| | ||||||||| Sbjct 11923 TGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTACTTCCAACGTAATAGTT 11982 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || ||||| | |||||| Sbjct 11983 TTTCCTGTGAGCGTTTTTACGAAAATTTGCATT 12015 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | |||||||||||| || ||||| || || |||||| | ||| | |||||||| Sbjct 12033 GACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTC 12092 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| | || ||||| || | | || ||||| || || || Sbjct 12093 TAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTG 12152 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||||| ||| || | || | | || || ||| ||||| | ||| || || || Sbjct 12153 AATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTT 12212 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| |||||||| || ||||||| ||||| Sbjct 12213 GCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| || || || ||||| || || | || ||||| | Sbjct 11580 CAAG-TGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTCTTCCA 11638 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | | |||||||| | | ||| ||||| || ||||| | Sbjct 11639 ATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATCTTGTA 11698 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| || | || | | || || || ||||| | ||| || ||||| | Sbjct 11699 TTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGTTTTTC 11758 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || ||||| | |||||| Sbjct 11759 CGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || || || |||||||| || || ||| | || | ||||| Sbjct 12259 AGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTGAGTGTACGACCATCC 12318 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || | | || ||||| | | ||| |||||||| ||| Sbjct 12319 TCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTATCT 12378 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| || |||| | |||| || || ||||| | ||||| ||| Sbjct 12379 TGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGTT 12438 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | || || ||||| | |||||| Sbjct 12439 TTTCCTGTCAATGTTTTTACGAAAATTTGCATT 12471 >seq2470 Length=523 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || || || |||||||| || || ||| || || | |||||| Sbjct 22 AGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCT 81 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| |||||||| || | || || ||||||| | ||| |||||||| ||| Sbjct 82 TCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCT 141 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| ||| | || | |||| || || ||||| | ||||||||| Sbjct 142 TGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACTTCCAATGTAATAGTT 201 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || ||||| | |||||| Sbjct 202 TTTCCGGTGAGCGTTTTTACGAAAATTTGCATT 234 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||||||||| || |||||||| || || |||||| | ||| | |||||||| Sbjct 252 GACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTC 311 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| | || ||||| || | | || ||||| || || || Sbjct 312 TAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTG 371 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||||| ||| || | || | | || || ||| ||||| | ||| || || || Sbjct 372 AATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTT 431 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| |||||||| || ||||||| ||||| Sbjct 432 GCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq27679 Length=10833 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACT---CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG- 151957 |||| |||||| | |||| || || ||||| || | | ||| || |||||||| | Sbjct 2215 TGAA-AGTAGAGTTACCTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAAT 2157 Query 151958 -GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||||| || |||||||| | | |||||||||| | ||| |||||||| ||||| | Sbjct 2156 TGCTTT--CCAGCGAAGATCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGA 2099 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || ||| | || | ||||| || ||||| || ||||||||||| | Sbjct 2098 TCTTCTGCTTTACATTTTCAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTAC 2039 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || |||||||| | |||||| Sbjct 2038 CAGTCAATGTTTTCACGAAAATCTGCAT 2011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152832430973047