Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq24804 118 1e-21 seq47140 93.3 4e-14 >seq24804 Length=9356 Score = 118 bits (130), Expect = 1e-21 Identities = 156/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 23545 ATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATT 23604 |||| ||||||| || || ||||| ||||||| ||||| ||||| | |||||||||| Sbjct 6987 ATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATATT 6928 Query 23605 GCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTA 23664 || ||||| ||| |||||||| ||||| || ||||| ||||| || | | | | Sbjct 6927 GCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTTCT 6868 Query 23665 CCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACA 23724 ||||| || || || | ||||| ||||||||| | ||||| || ||| || ||| Sbjct 6867 CCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGACA 6808 Query 23725 CACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGT 23759 || || |||||||| || || || | |||||| Sbjct 6807 CAAGGCATGGTTTCAATAGCGTTGAATA-AAAAGT 6774 Score = 111 bits (122), Expect = 2e-19 Identities = 134/181 (74%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 23782 TATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAAC 23841 || || || || | ||||||||||||||| ||||| | ||| ||||||| || ||||| Sbjct 6683 TAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAAT 6624 Query 23842 CCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTT 23901 || || ||| |||| ||||||| | |||||| || | ||| || | || ||| |||| Sbjct 6623 CCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATTT 6564 Query 23902 TCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT 23961 || ||||| ||||||||| ||||| || || || | ||| | | || |||| |||| Sbjct 6563 TCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAAT-AAATTTCTT 6505 Query 23962 T 23962 | Sbjct 6504 T 6504 >seq47140 Length=38879 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832 ||| ||| || ||||| || | ||| || |||||||| ||||| | ||||||||||| Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTA 23892 || ||||| || || || ||| ||||||| | ||| || || | ||| || | || Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 23893 GCTAAATTTTCGTTAACAATACCATC 23918 ||||||| || ||||| |||||||| Sbjct 14298 ACTAAATTCTCATTAACGATACCATC 14273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521052185959800