Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq39894 93.3 3e-14 seq18352 91.5 1e-13 seq2470 87.8 1e-12 >seq39894 Length=23042 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | || |||| ||||| || |||||||| || || || Sbjct 12009 TTGCATTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATA 12068 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| || | || || | ||| || ||||| |||||||| | |||||||| Sbjct 12069 ATCGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATC 12128 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | ||||| || ||| || || ||||| || ||| | || || |||| | Sbjct 12129 AGGTGGAATGCCTTCTTTGTCCTGAATTTT-TGCTTTAACGTTTTCGATCGTATCGGACG 12187 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| || ||||| || || |||||||||||||| Sbjct 12188 GCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || || ||||||||||| || || ||| |||| || | || || Sbjct 12262 ACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTGAGTGTACGACCATCCTCA 12321 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||| || ||||| || || || || | || | ||||||||| | | | Sbjct 12322 AGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTAT-CTTG 12380 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || |||| | |||| | || ||||||| | ||| || || | ||||||||| || Sbjct 12381 AATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGTTTT 12440 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | || || ||||| |||||||| Sbjct 12441 TCCTGTCAATGTTTTTACGAAAATTTGCAT 12470 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | || |||| ||||| || |||||||| || || || Sbjct 12465 TTGCATTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATA 12524 Query 44164 ATCG--GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| | ||||| || |||| |||| || || |||||||||||||| || || ||| Sbjct 12525 ATCGCTGAGAGTT--CGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGA 12582 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGC 44280 || | || | ||||| || ||| | | || ||||| | | || | || || |||| Sbjct 12583 TCAGGTGGAATGCCTTCTTTGTCC-TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGA 12641 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || |||| || || || ||||| ||||| || || || || || ||||| Sbjct 12642 CGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 >seq18352 Length=35742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||||| | | |||| || ||||| ||||||||||||||||| || Sbjct 20221 CATTCCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTC 20162 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | || || || |||| || ||||| || ||||| || || ||||| ||||| || Sbjct 20161 AGAAAG--GGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCC 20104 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | ||||| || || || || ||| | || | |||||||| || Sbjct 20103 GGAGGTATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGC 20044 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| |||||||| || || || | || || ||||| |||||||| Sbjct 20043 TCTACTTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | | |||| ||| || ||| || |||||||||||||| Sbjct 19768 TTGCATACCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTA 19709 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| || || || |||| || || || || ||||| ||||| | ||| || || Sbjct 19708 GTCGGAAAG--GGTTCTTCCGTCTTCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGG 19651 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | || | ||||||||| ||| | | || || | | |||| | || |||||| Sbjct 19650 TCAGGTGGTATACCTTCCTTGTCC-TGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCT 19592 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||| || || || || || | || |||||||| |||||||| Sbjct 19591 TGGTTCGACTTCGAGCGTGATAGTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | | |||| ||| || ||| || ||||| ||||| || Sbjct 19540 TTGCATACCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATA 19481 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || || || || || ||||| || || | ||| ||||| || Sbjct 19480 GTCCGAAAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTC 19421 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || || || || || || ||| | || |||| |||||| || Sbjct 19420 GGGGGGAATTCCCTCTTTGTCTTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGG 19361 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||| ||||| || || || | |||||||||||| |||||||| Sbjct 19360 TTCGACTTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 >seq2470 Length=523 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | || |||| ||||| || || ||||| || || || Sbjct 228 TTGCATTCCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATA 287 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| || | || || | ||| || ||||| |||||||| | |||||||| Sbjct 288 ATCGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATC 347 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | ||||| || ||| || || ||||| || ||| | || || |||| | Sbjct 348 AGGTGGAATGCCTTCTTTGTCCTGAATTTT-TGCTTTAACGTTTTCGATCGTATCGGACG 406 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| || ||||| || || |||||||||||||| Sbjct 407 GCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359697072734769