Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq7785 96.9 5e-15 >seq7785 Length=64017 Score = 96.9 bits (106), Expect = 5e-15 Identities = 228/337 (68%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 50474 AGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAA 50533 ||| ||| | || ||||||||||| || |||||||||||||| ||||| |||| | | Sbjct 36924 AGGTGATCTCGGTCCTGTTTACGGATTCCAATGGAGACATTTCGGAGCTGAGTACAAAGA 36983 Query 50534 T-TGCGACGTAAATTACGAAGGTCAA-GGCGTGGATCAACTGCAAAAAATTATAACGACG 50591 ||| || ||||| | | ||| || ||||||||||| ||||| | ||| || Sbjct 36984 CATGC-ACACCGATTAC-ACGAACAAAGGAGTGGATCAACTACAAAACGTCATAGATACC 37041 Query 50592 TTGAAAACAAACCCCGACGATCGGCGTAT--TTTAATGACCGCCTGGAATCCAACCGATA 50649 | | | ||||| ||| | | || || | | ||| || ||||| || ||| Sbjct 37042 ATTAGGAATAACCCAGACTGTAGACGAATAATCTTATGTGCG--TGGAACCCTCTAGATT 37099 Query 50650 TAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATG 50709 || | ||| | |||||||| |||||| ||| || ||||| || | || || Sbjct 37100 TACCTAAAATGGCCTTACCTCCTTGTCATTGCTTAGTACAGTTTTACGCAGTAAACGGTG 37159 Query 50710 TTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769 || || || ||| ||||| | || |||||||||||||||||||| || ||||| Sbjct 37160 AATTGTCATGCCAAATGTATCAGCGTTCTGCTGATATGGGTTTAGGCGTACCATTCAATA 37219 Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | ||| |||| | || | || || |||||||||| Sbjct 37220 TCGCTAGTTACTCCTTGCTCACTTACATGATCGCTCA 37256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666517716916920