Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18352 122 8e-23 seq39894 111 1e-19 seq38187 86.0 6e-12 >seq18352 Length=35742 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || ||| || || |||||||||||||| || || ||||| Sbjct 19524 AGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGG 19465 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||| || ||||||||||| || || || || ||||| | ||||| | ||| Sbjct 19464 CCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCT 19405 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| ||||||| | || | | ||||||||| | || || || | ||| Sbjct 19404 TTGT-CTTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGT 19346 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || |||| ||||| |||||||| ||||| Sbjct 19345 GATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| ||||| ||||| || ||||| ||||| || ||||| | |||| ||| Sbjct 20199 ACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCG 20140 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || |||||||| || | || || ||||||| || | || || || || | Sbjct 20139 AGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCTTGG 20080 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||||| ||| || ||| ||||| || | ||| || |||| || ||||||| Sbjct 20079 ATTTTGGCCTTGACATTTTCGATG--GTGTCACTGGGCTCTACTTCCAGGGTAATCGTTT 20022 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || | || ||||||||||| ||||| Sbjct 20021 TGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || || |||| ||| | ||| || || || |||||||| || || Sbjct 20446 GCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGA 20387 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || |||||||| ||||| ||||| || || || || || || | || Sbjct 20386 AAGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGG 20327 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || || || || ||| |||| || | ||| | | || ||||| | ||| | Sbjct 20326 AATGCCTTCTTTATCT-TGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGA 20268 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || ||||| || |||| || || |||||||||||||| Sbjct 20267 CCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 >seq39894 Length=23042 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| |||||||| |||| ||| || || ||||| ||||| ||||| ||| | Sbjct 12472 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12531 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | || || ||||| || |||| || ||||| || | ||| Sbjct 12532 AGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGA 12591 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||||| ||| ||||||||| ||| | | || ||| || || || Sbjct 12592 ATGCCTTCTTTGTCC-TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGAC 12650 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || ||||| ||||| ||||||||||| Sbjct 12651 TTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| || | |||||||| || || ||||| || || ||||||||| | Sbjct 12244 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTG 12303 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| || |||||||| |||| || |||||||| | || Sbjct 12304 AGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGG 12363 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | | ||||| || ||| |||| |||| ||| || |||||| | || || Sbjct 12364 ATACCTTCCTTATCT-TGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGAC 12422 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| |||||||| || |||| || ||||||||||| ||||| Sbjct 12423 TTCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCAT 12470 >seq38187 Length=9425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||||| ||| || ||| || || ||||||||||| ||| | ||| || Sbjct 3203 AGACGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGG 3144 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| | | || || |||||||| || | || ||||| |||| || | | || Sbjct 3143 CCGTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCT 3084 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || |||| || | ||| | | ||| |||| | ||| || | || || Sbjct 3083 TTATCC-TGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGT 3025 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| || ||||| || |||||||| ||||| Sbjct 3024 GATTGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461917646768400