Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq63 87.8 2e-12 >seq63 Length=804878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || || |||||||| || || |||||| | ||| | ||||||||||| || Sbjct 5239 AATCTGTCTGCGACAAATTCGATGTAAGTGCACATGAGTTCAGAATTCATTCCTATCAGG 5180 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | ||||| | ||||| ||||||||| | || || || || || ||| | ||||| Sbjct 5179 CTAACCGGTAACGCTTCTGTCAAAAATTCCTTTTCGATCACCACAGCATCCATTATAATC 5120 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 || ||||| ||||| | || | ||||| ||||| ||||| |||||| Sbjct 5119 TGTTTCACGCGTTCGAACGACGGCTTTTGAACTATGTGTTTGAACATTAGACACGCGAAA 5060 Query 16973 TCGCAATGTAATCCCT 16988 || ||||| ||||||| Sbjct 5059 TCACAATGCAATCCCT 5044 Score = 82.4 bits (90), Expect = 8e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095 ||||| |||||||||||||| |||||||| || || ||||| || |||||||| Sbjct 4929 CCTCGCTTCTTTAACCAAAAGATCGCGGCAAAACTGCCGCTGAAGAAGATTCCCTCGACC 4870 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGC 17155 | ||| || |||| || ||||||| |||| ||| | || | | ||||||| | Sbjct 4869 GCTGCGAATGCGAGTACACGTTCGGGAAACGTTGCGCTCTCGTGATGGATCCATTGTAAC 4810 Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 |||| | ||||||| ||| | |||| | ||||| || || ||||| || Sbjct 4809 GCCCAATTAGCTTTTTTCTTCACGCAAGGGAGAGTTTCGATCGCGTTAAACAA 4757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517503187138080