Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq144 93.3 5e-14 seq60 93.3 5e-14 seq108 86.0 7e-12 >seq144 Length=417326 Score = 93.3 bits (102), Expect = 5e-14 Identities = 183/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 7533 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 7592 Query 54464 CATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | || || || ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 7593 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 7651 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 | || || || | ||| |||||||| |||||||| || || |||||| || || || Sbjct 7652 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 7711 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 ||||||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 7712 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 7771 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCC 54670 ||| || ||| | || | ||| | ||| Sbjct 7772 GTATATTATAGCCGAATCCAGTCTTTCC 7799 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || ||||| | ||||| | | ||||| || ||||| || ||||| ||| Sbjct 6063 CCTTCGTACGTTTCGTAAGTTCCTTTTTCCATAGCTATCTCGCAACTGGCTTCTAAGGCA 6122 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 | ||| |||| |||||||||||||| | ||||| || | ||||| ||| ||||| Sbjct 6123 CTGTAGTAAAGCGTTTCGAAGATCTTAATGTTTAGTTCCTTCGCTTCTTTGCTCTCAAAC 6182 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 ||||| | | | | |||||| || |||| ||||| | || ||||| Sbjct 6183 GGATACCTCATCAACAAAAACGCATCCGCTAGCCCTTGTATTCCGATACC 6232 >seq60 Length=814933 Score = 93.3 bits (102), Expect = 5e-14 Identities = 183/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 813408 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 813467 Query 54464 CATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | || || || ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 813468 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 813526 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 | || || || | ||| |||||||| |||||||| || || |||||| || || || Sbjct 813527 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 813586 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 ||||||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 813587 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 813646 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCC 54670 ||| || ||| | || | ||| | ||| Sbjct 813647 GTATATTATAGCCGAATCCAGTCTTTCC 813674 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || ||||| | ||||| | | ||||| || ||||| || ||||| ||| Sbjct 811938 CCTTCGTACGTTTCGTAAGTTCCTTTTTCCATAGCTATCTCGCAACTGGCTTCTAAGGCA 811997 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 | ||| |||| |||||||||||||| | ||||| || | ||||| ||| ||||| Sbjct 811998 CTGTAGTAAAGCGTTTCGAAGATCTTAATGTTTAGTTCCTTCGCTTCTTTGCTCTCAAAC 812057 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 ||||| | | | | |||||| || |||| ||||| | || ||||| Sbjct 812058 GGATACCTCATCAACAAAAACGCATCCGCTAGCCCTTGTATTCCGATACC 812107 >seq108 Length=566964 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 54770 CTAAATAGtttttt-tGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 54828 ||||| ||| || | |||||||||||| | ||| |||| ||| ||||||||||| || | Sbjct 479101 CTAAA-AGTCTTCTCTGTTTCTTTGTGCAAATTAGATATGGCAATTCTAGCGGCCAGTGT 479159 Query 54829 GGCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||||||| |||||||| | || || | | |||| |||| |||| | | |||||| Sbjct 479160 TGCATAATCTGGATGTTGAG-AGATCAGGCTTACTGCGGTTTCAGCTGCTATATTGTCCA 479218 Query 54888 ATTCTACCGTTGTTA 54902 ||| |||||| ||| Sbjct 479219 CTTCGACCGTTCTTA 479233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593672944514880