Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq160 98.7 8e-16 >seq160 Length=383029 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||||||||||| ||||| || ||||| || || | || || | |||| Sbjct 143036 AGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCT 142977 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | || | |||||||||||| || | |||||||| || Sbjct 142976 TCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCT 142917 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | |||||| | ||| ||||| |||||||||| Sbjct 142916 TGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTC 142857 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 142856 TTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||| || || || || || || ||||| | || || | |||| Sbjct 143264 AGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCT 143205 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | || | ||||||||||| || | |||||||| || Sbjct 143204 TCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCC 143145 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGG--GCTCCGT-TTCCACGGTAATG 21140 || || ||| || | | | ||||| || ||| || ||||| ||||||| Sbjct 143144 TGAATTTTGGCTTTGACGTTTTCAATGGTATC---GGACGCTTCGACTTCCAAGGTAATG 143088 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || |||||||||| ||||||||||| |||||||| Sbjct 143087 GTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || || || | || || | ||||| |||||| || || || || || |||||| Sbjct 144650 TTTCCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCC 144591 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | ||| || | ||||||| ||||| || || || | || | |||||| |||||| Sbjct 144590 GACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGA 144531 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGT--TTCACCTGGCCGACAGTATCACCGGGCT 21123 || | ||||| || || | | ||||| || || | | | ||| ||| | || Sbjct 144530 GGAATTCCTTCTTTATC--CTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCT 144473 Query 21124 CCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | ||||| || || || |||||||| | ||||||||||| || ||||| Sbjct 144472 CGACTTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422225460962096