Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq160 116 4e-21 seq63 105 7e-18 seq150 102 8e-17 >seq160 Length=383029 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || ||||| || ||||||||||| | || |||||||| | Sbjct 144193 ATGCAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCG 144252 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | || ||||| || || || |||| ||| Sbjct 144253 GACACCATCGAGAATGTCAAAGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGATCAG 144312 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 144313 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAC 144372 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || | || || ||| Sbjct 144373 ATCCAGAAAGAATCAACTCTACAT 144396 Score = 107 bits (118), Expect = 2e-18 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || || ||||| ||||| | || ||||| || || Sbjct 143965 ATGCAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCC 144024 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||||| || || || || || || | || || Sbjct 144025 GACACAATTGAGAACGTT-AAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 144083 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || ||||| || |||| ||||| | |||||||| Sbjct 144084 GCAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTCGGACTACAA 144143 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||||||| | || ||||| |||| ||| Sbjct 144144 CATCCAGAAGGAATCTACTTTGCATTTAGTCTTG 144177 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || ||||||||||| ||| | || |||||||| || Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCC 143112 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||||| |||| | ||||||| || || || || || || | ||||| Sbjct 143113 GATACCATTGAAAACG-TCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCA 143171 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || |||||||| || |||| ||||| | |||||||| Sbjct 143172 GCAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAA 143231 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || | || || ||| Sbjct 143232 TATCCAGAAAGAATCAACTCTACAT 143256 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || || || ||||| ||||| ||| | || || || || | Sbjct 142825 ATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCGTCT 142884 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| |||||| ||||| | || || || || || || | ||||| Sbjct 142885 GATACGATTGAGAACG-TCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCA 142943 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || |||||||| || |||| ||||| | || ||||| Sbjct 142944 GCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAA 143003 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| |||| ||||| Sbjct 143004 CATCCAGAAGGAATCCACTTTGCAT 143028 >seq63 Length=804878 Score = 105 bits (116), Expect = 7e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||||| ||||| ||||| || | || ||||| || | || || | |||||| | | Sbjct 4757 TTGTTTAACGCGATCGAAACTCTCCCTTGCGTGAAGAAAAAAGCTAATTGGGCGTTACAA 4816 Query 117005 TGGATCGCCGGCA-GAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 |||||| | || ||||| || | || ||| || | | || ||||| || |||| Sbjct 4817 TGGATC--CATCACGAGAGCGCAACGTTTCCCGAACGTGTACTCGCATTCGCAGCGGTCG 4874 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 |||| ||||||| |||||||| ||||| || |||||| | ||||| || || | | Sbjct 4875 AGGGAATCTTCTTCAGCGGCAGTTTTGCCGCGATCTTTTGGTTAAAGAAGCGAGGGGTTA 4934 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 |||| ||||| ||||||||||| || |||||||| Sbjct 4935 TGCCAGGCCTTACTTTCAGCAATGAACTCATCTC 4968 >seq150 Length=403005 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || || ||||||||||| | || |||||||| | Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | |||| ||||||| |||||||| || || || | || ||| Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 341295 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || || || || || || || | | ||||| ||| |||||| Sbjct 341296 CAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAAC 341355 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||| || |||| || || || || |||||| Sbjct 341356 ATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGC 341391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515176977786560