Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq160 131 3e-25 >seq160 Length=383029 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| |||||||| || || | || | || || | Sbjct 143509 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 143568 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || ||||| |||||||||||||| || || || ||||| Sbjct 143569 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAG 143628 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || || | || ||||| ||| || ||| Sbjct 143629 CAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACAAT 143688 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||||| ||||||||| | ||| |||| ||||| || Sbjct 143689 ATCCAAAAGGAATCTACTTTACATTTGGTTCTTCGTCTACGTGGTGGCAT 143738 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| |||||||||| || ||||| || || || | || | || || Sbjct 142822 ACCATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCG 142881 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| || | || ||||| |||||||| ||||| || ||||| || Sbjct 142882 TCTGATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGAC 142941 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || || | || ||||| |||||||| | || || | || ||||| |||||| Sbjct 142942 CAGCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTAC 143001 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| ||||||||||||||| | ||| |||| ||||| || Sbjct 143002 AACATCCAGAAGGAATCCACTTTGCATTTGGTTCTTCGTCTACGTGGTGGCAT 143054 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| |||||||| || || | || | ||||| Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCC 143112 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| |||||||| ||||| ||||| || || || || || Sbjct 143113 GATACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCAG 143172 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| |||||||| | || || | || ||||| ||| || ||| Sbjct 143173 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143232 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | |||||||| | ||| |||| ||||| || Sbjct 143233 ATCCAGAAAGAATCAACTCTACATTTGGTACTTCGTCTACGTGGTGGCAT 143282 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || |||||||| || || | || | || || | Sbjct 143281 ATGCAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCT 143340 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || ||||| |||||||||||||| || || || || || Sbjct 143341 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAG 143400 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| |||||||| | || || | || ||||| |||||| || Sbjct 143401 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143460 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | |||||||| | ||| |||| ||||| || Sbjct 143461 ATACAGAAAGAATCAACTCTACATTTGGTACTTCGTCTACGTGGTGGCAT 143510 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | |||||||| ||||| ||||| || ||| | ||| | ||||| Sbjct 144193 ATGCAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCG 144252 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| || ||||||||||| || || || ||||| Sbjct 144253 GACACCATCGAGAATGTCAAAGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGATCAG 144312 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || || || ||||| || | ||||| | || ||| | || || || Sbjct 144313 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAC 144372 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | |||||||| | ||| |||| ||||| || Sbjct 144373 ATCCAGAAAGAATCAACTCTACATTTGGTACTTCGTCTACGTGGTGGCAT 144422 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || |||||||| || || | || | || || | Sbjct 144421 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 144480 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || ||||| || ||||||||||| || || || || ||| Sbjct 144481 GACACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCAA 144540 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || || || ||||| || | ||||| | || ||| | || || ||| Sbjct 144541 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAT 144600 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || |||||||| ||| ||||||| ||| | || | || ||||| Sbjct 144601 ATACAGAAAGAATCCACTCTGCATTTAGTTCTGCGACTTCGTGGTGG 144647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755394090380800