Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq160 114 1e-20 seq239 107 2e-18 seq222 107 2e-18 seq150 104 2e-17 >seq160 Length=383029 Score = 114 bits (126), Expect = 1e-20 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | ||||| || || || | ||||| || || || |||||||| || Sbjct 144193 TACCTCCACGAAGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCG 144134 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||||||||||| ||||| ||| |||| | | |||||||| |||| Sbjct 144133 ACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAG 144074 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || |||||| ||||| | || | ||||| | ||||| Sbjct 144073 GAATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGA 144014 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| ||||| |||||||| || || |||||||| Sbjct 144013 CTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||| || || ||||| || || ||||| || ||| Sbjct 143261 ACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143202 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||||||||| |||| | | |||||| || ||||| || || ||||| || | Sbjct 143201 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGA 143142 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||| | ||| || | ||| ||||| || | ||| | ||||| Sbjct 143141 ATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCT-TCGACTTCCAAGGTAATGGTTTT 143083 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| |||||||| ||||| || |||||| Sbjct 143082 GCCGGTTAGAGTTTTGACAAAGATTTGCATG 143052 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||| || ||||||||||| || ||||| || ||| Sbjct 143489 ACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCG 143430 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||||||||| |||| | | |||||| || ||||| || || || || ||| Sbjct 143429 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGG 143370 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||| | ||||| | |||||| || | || | |||||| Sbjct 143369 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTG 143310 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||||||| ||||| ||||||||| Sbjct 143309 CCGGTGAGAGTTTTGACAAAGATCTGCATG 143280 Score = 107 bits (118), Expect = 2e-18 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || ||||| || ||||| || || ||||| || ||| Sbjct 143945 ACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143886 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| | | |||||||| ||||| || || ||||| || | Sbjct 143885 AGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGA 143826 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||||| | || | ||||| | |||||| || | || | |||||| Sbjct 143825 ATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTG 143766 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||||||| ||||| ||||||||| Sbjct 143765 CCGGTTAGAGTTTTGACAAAGATCTGCATG 143736 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || ||||| || ||||| || || ||||| || ||| Sbjct 143717 ACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143658 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| ||||| |||| | | ||||||||| ||||| || || || || ||| Sbjct 143657 AGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTGG 143598 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||| | ||||| | |||||| || | || | |||||| Sbjct 143597 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTG 143538 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||||||| ||||| ||||||||| Sbjct 143537 CCGGTTAGAGTTTTGACAAAGATCTGCATG 143508 Score = 100 bits (110), Expect = 2e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||| || |||||||| || || ||||| |||||| Sbjct 144401 ACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCG 144342 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 ||||| ||||| ||| |||| | | ||||||||| ||||| || || || || | |||| Sbjct 144341 AGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGT 144282 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| ||| || | |||| |||||||| ||| |||||||| | || | |||| Sbjct 144281 -ATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCT-TCGACCTCCAGAGTGATGGTTT 144224 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || || || ||||| Sbjct 144223 TACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || || || ||||||||||| || ||||| || ||| Sbjct 143033 ACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCG 142974 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||||||||| |||| | | |||||| || || || || || ||||| ||| Sbjct 142973 AGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGG 142914 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | || || | ||| || || | ||| | || ||| Sbjct 142913 ATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTG 142854 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || ||||||||||||||||||| Sbjct 142853 CCAGTAAGTGTCTTTACAAAAATCTGCATGG 142823 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || || ||||| || || ||||| ||||||||||| ||||| Sbjct 144617 GTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCG 144558 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGTTT 118660 ||| |||| | | ||| || || ||||| || || || || || |||| |||| || Sbjct 144557 GCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTATCCTGTA-TTTTGGCCTT 144499 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | |||||| || | || | ||||||||||| || || Sbjct 144498 GACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTGAGGGT 144439 Query 118721 TTTTACAAAAATCTGCATG 118739 ||| ||||| ||||||||| Sbjct 144438 TTTGACAAAGATCTGCATG 144420 >seq239 Length=229837 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || || ||||| || | ||| || |||||| ||||| || || ||| ||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||||||||||||||| || || || |||||||||||| ||| || || || | || Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | ||||| | | || ||||| | ||| | || || || || |||||||| || | Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 118729 AAATCTGCATGG 118740 | |||||||||| Sbjct 6304 ATATCTGCATGG 6315 >seq222 Length=252824 Score = 107 bits (118), Expect = 2e-18 Identities = 175/243 (72%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 19353 TTCCGCTTTGTACGAATAGTCAAACTCTTGTTCGACGCCGCCCATTTTCATGATTTGTTC 19412 |||||| | ||| | ||| || | ||| ||||| ||||||| ||| | | | | || Sbjct 237478 TTCCGCATCGTATGGATAATCCGATTCTAATTCGAGACCGCCCAACTTC-TCAATGGCTC 237420 Query 19413 -GTAGGCGGTGTGAATTAACCCGCCATCGCATCCCATATCGACGAAATCGCAATCGACCA 19471 ||| ||| ||| | ||||| | ||| ||| ||| | | |||||| ||||||| Sbjct 237419 TGTACGCGTTGTCCGGCAGACCGCCGTTGCAACCCTCATCCAAGTCATCGCAGTCGACCA 237360 Query 19472 ACTGTTGCTCGGATAAATCGATCAACCGATCG---TACTTGATGGCATACTGACTCTCGA 19528 || ||||||||| | ||| |||| | | | | |||||| |||||||| | ||||| Sbjct 237359 GCTCTTGCTCGGACAG--CGA-CAACAGCTGGCCATGCTTGATCGCATACTGGCCCTCGA 237303 Query 19529 GCGCTCCCAG--ACTCGCAAACCGCCAACACGCGCCGCACATGCCCTGATCTTTCACCGA 19586 | | |||| || || |||| |||||||| ||||||||||||||||||||| ||||| Sbjct 237302 -CATTGCCAGTTAC-CGAAAACGCCCAACACGAGCCGCACATGCCCTGATCTTTTACCGA 237245 Query 19587 AGT 19589 ||| Sbjct 237244 AGT 237242 >seq150 Length=403005 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | ||| || | ||| | ||| || ||||| || |||||||||||| Sbjct 341402 CCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAA 341343 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||| || || || || || || | || | |||||||||||| ||||| Sbjct 341342 AGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGA 341283 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 || || || ||||| |||||| ||||| | ||| | ||| || | ||| ||||| Sbjct 341282 ATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCT-TCGAC 341224 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || || |||||||||||||| ||||||||| Sbjct 341223 TTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATG 341175 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118557 ATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGC 118616 |||||||||||| | || | ||| || | |||||| ||||| |||| ||||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 118617 TGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTG 118676 || ||||||||||| ||||| || |||||| ||||| ||| || | ||| | ||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 118677 TCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 || | | |||||| || | ||| | ||||| || || |||||||| || || || ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 118737 AT 118738 || Sbjct 341405 AT 341404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | |||||| || || || | ||| || ||||| || ||||||||||| Sbjct 342049 ACCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 341990 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | ||| || | |||||| ||||| |||| ||||| || ||||||||||| Sbjct 341989 AAGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGG 341930 Query 118631 TATGCCCTCCTTGTCT 118646 ||||| || |||||| Sbjct 341929 AATGCCTTCTTTGTCT 341914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433795736408752