Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq160 111 2e-19 seq150 107 3e-18 seq12 100 4e-16 >seq160 Length=383029 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||||||||||||| || ||||| || ||||| | || | | || || Sbjct 143717 ACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143658 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct 143657 AGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTG 143599 Score = 109 bits (120), Expect = 8e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||||| ||| |||||||| ||| || |||||||| | || | | || || Sbjct 143490 TACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTC 143431 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| Sbjct 143430 GAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTG 143371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/210 (68%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||||| ||| |||||||| || || || || || || || | | || || Sbjct 144402 TACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTC 144343 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||| || || |||||||| ||||||||||||||||||||||||||||| || Sbjct 144342 GAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTG 144283 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 || || || ||| || || || ||||| ||||| Sbjct 144282 TATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTT 144223 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| | ||| || | |||||||||||| Sbjct 144222 ACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 96.9 bits (106), Expect = 5e-15 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| ||||| || ||||| || ||||| | || | | || || Sbjct 143945 ACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143886 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| || Sbjct 143885 AGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTG 143827 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||||| ||| |||||||| ||||| || ||||| | || | | || || Sbjct 143262 TACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTC 143203 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| ||||| || ||||| || |||||||||||||| ||||| || Sbjct 143202 GAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTG 143143 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| ||||| ||||| || || || |||||||| | || | | || || Sbjct 143033 ACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCG 142974 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| |||||||| ||||| || || ||||||||||| |||||||| Sbjct 142973 AGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTG 142915 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||||| | || ||||| | ||| |||||||| |||||| || || | Sbjct 144649 TTCCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCG 144590 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | || || | || ||||| || || |||||||| || || ||||||| Sbjct 144589 ACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAG 144530 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||||||||| || Sbjct 144529 GAATTCCTTCTTTATCCTG 144511 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| || || || ||||| ||||||||||| || || || || || || Sbjct 144191 CCTCCACGAAGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGAC 144132 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | || || | || ||||| || || ||||||||||||||||| |||||| Sbjct 144131 AATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGA 144072 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 144071 ATTCCTTCCTTATCCTG 144055 >seq150 Length=403005 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | |||||| || || ||||||| || |||||||| || || ||||| ||| Sbjct 342048 CCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAA 341989 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || || ||||| |||||||| || | | ||| ||||| |||||| Sbjct 341988 AGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGA 341929 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 341928 ATGCCTTCTTTGTCTTG 341912 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | || || | || | || |||||||| || || ||||| | Sbjct 341404 TTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGG 341345 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| ||||| | ||| |||| ||| || || ||||||||||| | |||||||| |||| Sbjct 341344 AAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAG 341285 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| || || Sbjct 341284 GAATTCCTTCTTTGTCCTG 341266 >seq12 Length=1501184 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| |||||||| || || |||||| || || || ||||| |||| || || Sbjct 683427 ACCAAATGCAAAGTAGACTCCTTCTGTATATTGTAGTCCGACAGAGTCCTGCCGTCCTCC 683486 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || || |||||||| || ||||||||||||||||| || ||||||||| Sbjct 683487 AACTGCTTTCCAGCGAAGATCAATCTTTGCTGATCAGGTGGAATTCCT 683534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743465468011520