Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq63 82.4 7e-11 >seq63 Length=804878 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 16039 TTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCAT 16098 ||| ||| |||| || | | || ||||| || || |||||||| || || ||| Sbjct 5264 TTTTTCGTATCCTAACGCAACAAACAATCTGTCTGCGACAAATTCGATGTAAGTGCACAT 5205 Query 16099 TAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttC 16158 | ||| | ||||||||||| | |||| || | |||||||| ||||| | ||||| Sbjct 5204 GAGTTCAGAATTCATTCCTATCAGGCTAACCGGTAACGCTTCTGTCAAAAATTCCTTTTC 5145 Query 16159 TATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT---AA 16215 || || || || || || || || || | || | | |||| || ||| | Sbjct 5144 GATCACCACAGCATCCATTATAAT--CTGTTTC-ACGCGTTCGAACGACGGCTTTTGAAC 5088 Query 16216 TAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 || |||||| ||||||| ||| || ||||||||||||||||| Sbjct 5087 TATGTGTTTGAACATTAGACACGCGAAATCACAATGCAATCC 5046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462474097141600