Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq160 96.9 3e-15 >seq160 Length=383029 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || || ||||| || |||||||| || | ||| |||| || Sbjct 143262 TACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTC 143203 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||||| || || ||||||| ||| ||||| ||||| | || ||||| ||| Sbjct 143202 GAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTG 143143 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | | | || | || || |||| |||||| || || Sbjct 143142 AATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTT 143083 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || ||||| || ||||||||||||||| Sbjct 143082 GCCGGTTAGAGTTTTGACAAAGATTTGCATG 143052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || || ||||| ||| || ||||| || |||||||| |||| ||| |||| || Sbjct 144629 ACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCGTCCTCG 144570 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| | ||||||||| ||||| | || || || ||| Sbjct 144569 AGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTATCCTGT 144510 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| |||| || |||| || || || ||| Sbjct 144509 ATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTG 144450 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || |||||||| |||||| Sbjct 144449 CCGGTGAGGGTTTTGACAAAGATCTGCATG 144420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || | ||| |||| || || || ||||||||||| Sbjct 144155 TCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144096 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| | || || || ||||| | || ||||| ||| |||||| |||||| | Sbjct 144095 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTC 144036 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| |||| || |||| || || || || || || ||||| || || Sbjct 144035 TCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGACN 143976 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 143975 AAGATCTGCAT 143965 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || || ||||| ||||||||||| |||| ||| |||| || Sbjct 144402 TACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTC 144343 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||||||||| ||||| | ||| || || ||||| | || || || ||| Sbjct 144342 GAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTG 144283 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| || || | | | | ||||| | || ||||||| || || || || Sbjct 144282 TATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTT 144223 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || || |||||||| Sbjct 144222 ACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395043632997676