Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq160 98.7 8e-16 >seq160 Length=383029 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | |||||||| || || ||||||||||| || || |||||||| | | Sbjct 143279 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGAC 143220 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| | ||||| || ||| |||| | || || || || || Sbjct 143219 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 143160 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || ||||| | | ||| || || | ||| Sbjct 143159 ATTCCTTCCTTATCCTGAATTT-TGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGAC 143101 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| ||| |||||||||| | ||||| ||||| |||||||| Sbjct 143100 TTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | |||||||| || || ||||||||||| || |||||||| || | | Sbjct 143507 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGAC 143448 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| | ||||| || ||| |||| | || || || || || Sbjct 143447 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 143388 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| |||| |||||| | | ||| |||||| | |||| | Sbjct 143387 ATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACT 143328 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||||||||| | ||||| ||||| || ||||| Sbjct 143327 TCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || | | ||| |||| || | || ||||| ||||| || |||||||| | | Sbjct 143963 CCNCCACGNANACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGAC 143904 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| | ||||| || ||| |||| | |||||| ||||| || Sbjct 143903 AATGTGCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGA 143844 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||||| ||| || | ||| ||||| | |||| | Sbjct 143843 ATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACT 143784 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||||||||| | ||||| ||||| || ||||| Sbjct 143783 TCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379313689940220