Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq150 100 3e-16 seq144 95.1 1e-14 seq60 95.1 1e-14 seq108 87.8 2e-12 >seq150 Length=403005 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| || ||| | || || || | || Sbjct 341404 ATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTCA 341463 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || ||| | ||| ||||| |||||| | || ||||| || Sbjct 341464 GACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 341523 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || |||||||| || ||||| |||||||||||||| Sbjct 341524 CAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGA 341558 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||| |||||| | || ||||| || || |||||||| || ||||| |||||||||||| Sbjct 341915 GACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAACAGTTGGAA 341974 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | ||| | ||||| ||||| || |||||||| || || ||| | || | Sbjct 341975 GATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACATTTAGTTTTG 342034 Query 31406 AGACTGAGGGGCGGT 31420 ||||| |||| ||| Sbjct 342035 AGACTTCGGGGAGGT 342049 >seq144 Length=417326 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||| || || | || |||||||||||||| || || | ||||||||| ||||||||||| Sbjct 7170 AAAATCAAAAATATCAGCATGCCACGGCTCCAGATATATGGCAAACGCTCCCGGTCTCTT 7229 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 ||| || || |||||||| ||| ||| ||| |||||||| | ||| Sbjct 7230 ATTTCCTCCTTGATCGACATAAATGGCTATGTCGTTGTACAATTTTA 7276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 179/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||| ||||| |||||||||| ||| | |||||| | || || | || Sbjct 5690 TCGTTCCATAAACCTTTGGCGGTCAAGTCTCGCATCAGATGCGGATTAACGATAACGAAT 5749 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | ||||| | || || ||| |||| | || |||| || || || Sbjct 5750 TCTCCCGATAGCACGCGTCTAATATAGATATTGCTTGTGTAAGGCTCGATGGACTCGTTA 5809 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 ||||| | ||||| || || || || || ||||| || || | || ||||| ||||| Sbjct 5810 TTTCCTAAAATCTGCGCCGTGGAGGCCGTAGGCATGGGAGCTATCAAAAGCGAATTTCTG 5869 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACC-AGTCCCACAGATCGGACGGCGT 22647 | |||||||| | ||||| ||| | ||| || | | ||||| || | ||| | Sbjct 5870 ACACCGTGCTTCGCGATTTTTGCCTTCAAT-TCGTCCCAATTCCACAAATTTGTCGGTTT 5928 Query 22648 CACATTGTCCCACATATCGTATTG 22671 || |||||||||||||||||| Sbjct 5929 TAC---GTCCCACATATCGTATTG 5949 >seq60 Length=814933 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||| || || | || |||||||||||||| || || | ||||||||| ||||||||||| Sbjct 813045 AAAATCAAAAATATCAGCATGCCACGGCTCCAGATATATGGCAAACGCTCCCGGTCTCTT 813104 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 ||| || || |||||||| ||| ||| ||| |||||||| | ||| Sbjct 813105 ATTTCCTCCTTGATCGACATAAATGGCTATGTCGTTGTACAATTTTA 813151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 179/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||| ||||| |||||||||| ||| | |||||| | || || | || Sbjct 811565 TCGTTCCATAAACCTTTGGCGGTCAAGTCTCGCATCAGATGCGGATTAACGATAACGAAT 811624 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | ||||| | || || ||| |||| | || |||| || || || Sbjct 811625 TCTCCCGATAGCACGCGTCTAATATAGATATTGCTTGTGTAAGGCTCGATGGACTCGTTA 811684 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 ||||| | ||||| || || || || || ||||| || || | || ||||| ||||| Sbjct 811685 TTTCCTAAAATCTGCGCCGTGGAGGCCGTAGGCATGGGAGCTATCAAAAGCGAATTTCTG 811744 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACC-AGTCCCACAGATCGGACGGCGT 22647 | |||||||| | ||||| ||| | ||| || | | ||||| || | ||| | Sbjct 811745 ACACCGTGCTTCGCGATTTTTGCCTTCAAT-TCGTCCCAATTCCACAAATTTGTCGGTTT 811803 Query 22648 CACATTGTCCCACATATCGTATTG 22671 || |||||||||||||||||| Sbjct 811804 TAC---GTCCCACATATCGTATTG 811824 >seq108 Length=566964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 || || || ||||||| ||||| ||||| | | || || | |||||| || || ||| Sbjct 477269 GGACTACCGTCGTACGAATCGTAAGGACCTTTTTCGGCAGCTATTTCGCAACTAGCTTCC 477328 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTT 22810 |||||||||||||||| || ||||| |||| | || | |||| ||| |||| Sbjct 477329 AACGCGCCGTAATATAGCGTTTCGAAAATTTGAATATTGAGTTCGTTAGCGTTCTTGCTT 477388 Query 22811 TCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 || |||| ||| | ||||| | ||||| || |||| ||| || ||||| ||||| Sbjct 477389 TCAAACGG-ATATCTCATCAAGATAAACGCATCTGCCAAACCTTGTACGCCAATACC 477444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445729869443520