Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq144 91.5 2e-13 seq60 91.5 2e-13 >seq144 Length=417326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 7533 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 7592 Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 | || || || ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 7593 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 7651 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 | || || || | ||| |||||||| |||||||| || || || ||| || || || Sbjct 7652 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 7711 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || |||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 7712 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 7771 Query 63881 GTAAATAATAACCGAAT 63897 ||| || ||| |||||| Sbjct 7772 GTATATTATAGCCGAAT 7788 >seq60 Length=814933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 813408 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 813467 Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 | || || || ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 813468 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 813526 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 | || || || | ||| |||||||| |||||||| || || || ||| || || || Sbjct 813527 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 813586 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || |||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 813587 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 813646 Query 63881 GTAAATAATAACCGAAT 63897 ||| || ||| |||||| Sbjct 813647 GTATATTATAGCCGAAT 813663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629765986447680