Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq144 98.7 1e-15 seq60 98.7 1e-15 seq108 87.8 3e-12 >seq144 Length=417326 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 7533 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 7592 Query 80374 CATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432 | || || | ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 7593 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 7651 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 | || || || | ||| |||||||| |||||||| || || |||||| ||| || || Sbjct 7652 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 7711 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552 || ||||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 7712 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 7771 Query 80553 GTAAATAATAACCGAGTTGAGTTTATCC 80580 ||| || ||| |||| | ||| | ||| Sbjct 7772 GTATATTATAGCCGAATCCAGTCTTTCC 7799 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 ||||| || ||| || | ||| ||||||||||| || || || ||| |||| |||| Sbjct 6872 GTATACAACTCTTCAAATTTGTCACCCCAAACATCATCCAAACCGGGAGATTCACGAGGA 6931 Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 ||||||| ||||| |||| | | ||| |||| |||||| ||||| || ||||| Sbjct 6932 CACATCAGGCTCCACTTCTCATCGTTATATACACGTTCCATAAAAAGATCCGGTATCCAC 6991 Query 79969 AGAGCTATAAATAGATCTCTGG 79990 || || ||||| |||||||| Sbjct 6992 AGGGCATAAAATAAATCTCTGG 7013 >seq60 Length=814933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 813408 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 813467 Query 80374 CATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432 | || || | ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 813468 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 813526 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 | || || || | ||| |||||||| |||||||| || || |||||| ||| || || Sbjct 813527 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 813586 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552 || ||||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 813587 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 813646 Query 80553 GTAAATAATAACCGAGTTGAGTTTATCC 80580 ||| || ||| |||| | ||| | ||| Sbjct 813647 GTATATTATAGCCGAATCCAGTCTTTCC 813674 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 ||||| || ||| || | ||| ||||||||||| || || || ||| |||| |||| Sbjct 812747 GTATACAACTCTTCAAATTTGTCACCCCAAACATCATCCAAACCGGGAGATTCACGAGGA 812806 Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 ||||||| ||||| |||| | | ||| |||| |||||| ||||| || ||||| Sbjct 812807 CACATCAGGCTCCACTTCTCATCGTTATATACACGTTCCATAAAAAGATCCGGTATCCAC 812866 Query 79969 AGAGCTATAAATAGATCTCTGG 79990 || || ||||| |||||||| Sbjct 812867 AGGGCATAAAATAAATCTCTGG 812888 >seq108 Length=566964 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 79306 TCATAAGGTCCTTCCTTTTCGGC---TAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 || ||||| |||| ||||||| || ||| ||||| || || || || |||||||| Sbjct 477287 TCGTAAGGACCTT---TTTCGGCAGCTATTTCGCAACTAGCTTCCAACGCGCCGTAATAT 477343 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGC-TTCTAGGCTATCAAATGGATAATT 79421 | ||||||||||| | ||||||| || | || |||| ||| ||||| ||||| | Sbjct 477344 AGCGTTTCGAAAATTTGAATATTGAGTTCGTTAGCGTTCT-TGCTTTCAAACGGATATCT 477402 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | |||||||| ||||| || ||||| || |||||||| Sbjct 477403 CATCAAGATAAACGCATCTGCCAAACCTTGTACGCCAATACC 477444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718209937871840