Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq108 93.3 6e-14 seq144 89.7 7e-13 seq60 89.7 7e-13 >seq108 Length=566964 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 71388 ATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAAT 71447 |||||| || |||| || | |||| ||| ||||| || || || || || ||||| | Sbjct 477286 ATCGTAAGGACCTTTTTCGGCAGCTATTTCGCAACTAGCTTCCAACGCGCCGTAATATAG 477345 Query 71448 GGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 71507 ||||||||||| | ||||||| || | || | | ||| ||||| ||||| | | Sbjct 477346 CGTTTCGAAAATTTGAATATTGAGTTCGTTAGCGTTCTTGCTTTCAAACGGATATCTCAT 477405 Query 71508 GAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 | |||||||| ||||| || ||||| ||||||||||| Sbjct 477406 CAAGATAAACGCATCTGCCAAACCTTGTACGCCAATACC 477444 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 72763 CTAAATAGtttttt-tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAAT 72821 ||||| ||| || | |||||| ||||| | ||| |||| ||| ||||| ||||| || | Sbjct 479101 CTAAA-AGTCTTCTCTGTTTCTTTGTGCAAATTAGATATGGCAATTCTAGCGGCCAGTGT 479159 Query 72822 GGCATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||||||||||||| | || || | | |||| |||| ||||| | | |||||| Sbjct 479160 TGCATAATCTGGATGTTGAG-AGATCAGGCTTACTGCGGTTTCAGCTGCTATATTGTCCA 479218 Query 72881 ATTCTACCGTTGTTA 72895 ||| |||||| ||| Sbjct 479219 CTTCGACCGTTCTTA 479233 >seq144 Length=417326 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 7533 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 7592 Query 72457 CATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTAT 72515 | || || | ||| ||||||||||| ||| | || ||||| || || || Sbjct 7593 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 7651 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575 | || || || | ||| ||||| || |||||||| || || |||||| ||| || || Sbjct 7652 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 7711 Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 72635 || |||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 7712 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 7771 Query 72636 GTAAATAATAACCGAATTGAGTTTATCC 72663 ||| || ||| |||||| ||| | ||| Sbjct 7772 GTATATTATAGCCGAATCCAGTCTTTCC 7799 >seq60 Length=814933 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 |||||||| || ||| | | || | || ||||| || || || ||||| || || || Sbjct 813408 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 813467 Query 72457 CATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTAT 72515 | || || | ||| ||||||||||| ||| | || ||||| || || || Sbjct 813468 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 813526 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575 | || || || | ||| ||||| || |||||||| || || |||||| ||| || || Sbjct 813527 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 813586 Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 72635 || |||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 813587 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 813646 Query 72636 GTAAATAATAACCGAATTGAGTTTATCC 72663 ||| || ||| |||||| ||| | ||| Sbjct 813647 GTATATTATAGCCGAATCCAGTCTTTCC 813674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671084200142560