Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq150 152 4e-32 seq160 114 9e-21 >seq150 Length=403005 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | ||||| ||||| ||||| || |||||||||||| || |||| | ||| Sbjct 341387 AAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCT 341328 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||| ||| || || || | |||||||| || || || ||||||||||||||||| Sbjct 341327 TCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCC 341268 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| ||| ||| ||||||||||||| | ||| || || || || |||||| Sbjct 341267 TGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTT 341208 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| || ||||| Sbjct 341207 TTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 111 bits (122), Expect = 1e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 15182 ATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGT 15241 |||||||||||| || |||| | ||||| || ||||| ||||| | || | |||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 15242 TGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGT 15300 ||||| ||| ||||| ||||||||||| ||||| ||| |||||| ||||||| || Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCT-TTTACATTTTCTATAGT 341467 Query 15301 ATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTG 15360 || || || || | |||||||||||| || || |||||||| || || ||||| Sbjct 341466 GTCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTG 341407 Query 15361 CAT 15363 ||| Sbjct 341406 CAT 341404 Score = 102 bits (112), Expect = 6e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| ||||||||||| || ||||| ||||| || ||||||||||| ||| |||| | Sbjct 342037 TCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTTCTTCC 341978 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| || ||||| ||||| | || | ||||||||| ||| ||||| |||||||| Sbjct 341977 ATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTT 341918 Query 15268 GTCACAAAT-TTTGCTCTTTACAATTTC 15294 ||| || || ||| |||||| |||| Sbjct 341917 GTCTTGGATCTTAGCT-TTTACATTTTC 341891 >seq160 Length=383029 Score = 114 bits (126), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || ||||| || || || ||||| || || ||||| || | | ||| || |||||| Sbjct 143261 ACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTC--TGACAATGTGCGTCCGTCTT 143204 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | ||||| ||||| | ||||| | || ||||| ||||||||||| || || Sbjct 143203 CGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCT 143144 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||||| || || |||| ||||||||| ||| || || ||||||||||||| Sbjct 143143 GAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTT 143084 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || |||||||| ||||| |||||||| Sbjct 143083 TGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCT 15211 ||| ||||| | ||||| || || || ||||||||||| | | ||| || ||||| Sbjct 143034 AACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATC--TGACAATGTGCGTCCGTCT 142977 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| ||||| | ||||| | || ||||| |||||||||||| || || Sbjct 142976 TCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCT 142917 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || | || || ||||| ||||| || ||||||||||| Sbjct 142916 TGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTC 142857 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||||||||| ||||| Sbjct 142856 TTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || ||||| || || || ||||| |||||||||||||| | | ||| || |||||| Sbjct 143489 ACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATC--TGACAATGTGCGTCCGTCTT 143432 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | ||||| ||||| | ||||| | || ||||| |||||||||||||| || Sbjct 143431 CGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTT 143372 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| || |||| || || || || || || | || || |||| Sbjct 143371 GGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTT 143312 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || |||||||| ||||| || ||||| Sbjct 143311 TGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCT 15211 ||| ||||| | || || || ||||| || ||||| || | | ||| || ||||| Sbjct 143946 AACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTC--TGACAATGTGCGTCCGTCT 143889 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| ||||| | ||||| | ||| || || ||||||||||| || || Sbjct 143888 TCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC 143829 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| ||| || | || || || ||| || || || || || || ||| Sbjct 143828 TGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTT 143769 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| || ||||| Sbjct 143768 TTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||||||| || ||||| ||||| ||||| ||||| || || | | |||| || Sbjct 144630 AACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCGTCCTC 144571 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | ||||| | |||||||| |||||||||||||| || Sbjct 144570 GAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTATCCTG 144511 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || | || || || || || || || || || || ||||| Sbjct 144510 TATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTT 144451 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| || ||||| Sbjct 144450 GCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362150261429196