Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq160 109 4e-19 >seq160 Length=383029 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||||||||| || ||||| || ||||| || || ||| || | || || Sbjct 143261 ACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143202 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||| ||||| ||||||| |||||||| |||| | ||||| ||||| | Sbjct 143201 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGA 143142 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| |||||| | ||| ||||| | || || || || | ||||| ||||| Sbjct 143141 ATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTG 143082 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||||| ||| || ||||| ||||||||| Sbjct 143081 CCGGTTAGAGTTTTGACAAAGATTTGCATG 143052 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||||||||| || ||||| || || || ||||| ||| || | || || Sbjct 143489 ACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCG 143430 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||| ||||| ||||||| |||||||| |||| | |||||||||||| Sbjct 143429 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGG 143370 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| || || | || ||| || || | || |||||||| Sbjct 143369 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTG 143310 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | ||| || ||||| || |||||| Sbjct 143309 CCGGTGAGAGTTTTGACAAAGATCTGCATG 143280 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| || || ||||| ||||| || || ||| || | || || Sbjct 143717 ACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143658 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || ||||| ||||||| ||||| || |||| | |||||||||||| Sbjct 143657 AGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTGG 143598 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| || || | || ||| || || | || |||||||| Sbjct 143597 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTG 143538 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||||| ||| || ||||| || |||||| Sbjct 143537 CCGGTTAGAGTTTTGACAAAGATCTGCATG 143508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354749252826288