Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq150 98.7 8e-16 seq160 89.7 4e-13 seq222 86.0 5e-12 >seq150 Length=403005 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | ||||| || ||||||||||| |||||||| || ||||||||||| Sbjct 342048 CCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAA 341989 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||||||| ||||| || ||| | || || | ||||||||| || Sbjct 341988 AGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGA 341929 Query 20102 ACGCCTTCTTTGTC 20115 | |||||||||||| Sbjct 341928 ATGCCTTCTTTGTC 341915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | ||| || | || ||||| |||||||| || |||||||||||| Sbjct 341404 TTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGG 341345 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | |||||| | ||| || || ||| |||| | | ||| ||||| | Sbjct 341344 AAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAG 341285 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| || || | | | | ||| || ||| Sbjct 341284 GAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGA 341225 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || |||||||| || || | ||||| ||||| || ||||| Sbjct 341224 CTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 >seq160 Length=383029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||||||||| || |||||||| || || ||||| || || || ||||| Sbjct 143261 ACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143202 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| | || | |||||| || || || | ||||| || || | Sbjct 143201 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGA 143142 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| | |||| | ||| ||||| ||||||||||||| Sbjct 143141 ATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTG 143082 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| | ||||||||||| |||||||| Sbjct 143081 CCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 >seq222 Length=252824 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 102843 GTGACTAGTGTCAAAAATCAAGGCACGTGCGGTGCGTGTTGGGCG--TTCGCTACCCTTG 102900 |||||| || ||| |||| |||| |||||| ||||||||||| |||| || | || Sbjct 237239 GTGACTTCGGTAAAAGATCAGGGCATGTGCGGCTCGTGTTGGGCGTTTTCGGTAAC--TG 237296 Query 102901 GCAGTTTAGAAAGCCAGTTCGCAATCAAACACGATCAGCTCATAAATTTGTCAGAGCAAC 102960 ||| | | || |||||| || ||||| || | ||||| | |||| |||||| Sbjct 237297 GCAATGTCGAGGGCCAGTATGCGATCAAGCATGGCCAGCTGTTGTCGCTGTCCGAGCAAG 237356 Query 102961 AGCTCATCGACTGCGATTTTGTGGACATGGGCTGTGACGGGGGTTTGCTGCACACGGCGT 103020 |||| ||||||||||| |||| ||| || |||| ||| ||| | ||| |||| Sbjct 237357 AGCTGGTCGACTGCGATGACTTGGATGAGGGTTGCAACGGCGGTCTGCCGGACAACGCGT 237416 Query 103021 ACGAGGCCGTCATGAACATGGGCGGCATACAAGCCGAAAATGATTATCCGTACGAAGC 103078 || ||| | ||| ||||||| | || ||| |||||||| ||||| || Sbjct 237417 ACAGAGCCATTGAGAAGTTGGGCGGTCTCGAATTAGAATCGGATTATCCATACGATGC 237474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419553674458236