Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq150 181 2e-40 seq160 172 1e-37 seq239 131 4e-25 seq12 93.3 1e-13 >seq150 Length=403005 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | | || || || | ||| ||||||||||| || || || || Sbjct 341405 ATTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCG 341346 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||||||||| || || |||||||| | | ||| ||||||||| Sbjct 341345 GAAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGA 341286 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| |||||||| || || || |||||||||| |||||| || ||| Sbjct 341285 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCG 341226 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || |||||||| ||||||||||| |||||||| Sbjct 341225 ACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 140 bits (154), Expect = 7e-28 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||||| ||| ||||||||||| || || || ||||| |||||||| || ||||| Sbjct 342030 ACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTCC 341971 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||| |||||||| ||||| | |||||||| ||||| || |||||||| || || Sbjct 341970 AACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGG 341911 Query 104471 ATCTTTGCTTTTACATTTTC 104490 ||||| |||||||||||||| Sbjct 341910 ATCTTAGCTTTTACATTTTC 341891 Score = 123 bits (136), Expect = 6e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 || || || || || || ||||| || ||||| | ||||| |||||||| ||||| | Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 |||||||| ||||| || |||||||| || || || || |||||||||||||||| || Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | || || || || ||||| || || ||||| || ||||| || || || ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 104558 ATT 104560 ||| Sbjct 341405 ATT 341403 >seq160 Length=383029 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | |||||| | ||||| || ||||||||||| ||||| ||||| Sbjct 143282 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCT 143223 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| || |||||||||||||| || | |||||| || || ||| Sbjct 143222 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGA 143163 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||||||||| || ||||| || ||||| | ||||||| | ||| Sbjct 143162 GGAATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCG 143103 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 143102 ACTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | |||||| | ||||| || ||||||||||| || || ||||| Sbjct 144422 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCC 144363 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||||| || || || ||||| || || || | ||||| ||||| ||| Sbjct 144362 GACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGA 144303 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| || || ||||| ||||| || | ||| || | ||| Sbjct 144302 GGAATTCCTTCTTTATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCG 144243 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || ||||| || ||||| || || ||||| ||||| Sbjct 144242 ACCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | |||||| |||||||| || || ||||| ||||| Sbjct 143738 ATGCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCT 143679 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| |||||||| |||||||| || | |||||| ||||| ||| Sbjct 143678 GACAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGA 143619 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| || || || || || || ||||| | || || | || Sbjct 143618 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCG 143559 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || || || || ||||| ||||| |||||||| Sbjct 143558 ACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | |||||| | ||||| || ||||||||||| || || || || Sbjct 143510 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCT 143451 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| || |||||||||||||| || | |||||| || || ||| Sbjct 143450 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGA 143391 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| || || || || || || ||||| | || || | || Sbjct 143390 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCG 143331 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || || || || ||||| ||||| |||||||| Sbjct 143330 ACTTCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | ||| || || ||||| ||||| || || || || Sbjct 143054 ATGCCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCT 142995 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| || |||||||||||||| || | ||||| || || || Sbjct 142994 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGT 142935 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| || || || || || || || || | ||||| | ||| Sbjct 142934 GGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCT 142875 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||| ||||||||||| |||||||| |||||||| Sbjct 142874 ACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 125 bits (138), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| || || ||||| ||||| || | || | ||||| Sbjct 143949 AAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTC 143890 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||| |||||||| || | || || ||||| ||||| |||||||| ||||| Sbjct 143889 TTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 143830 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| || || || || || || | || ||| | || || || | ||| || || Sbjct 143829 CTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGT 143770 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| |||||||| Sbjct 143769 TTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | || ||||||||||| ||||| ||||| || || || | ||||| Sbjct 144632 AGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCGTCC 144573 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| || || || | |||||||| || ||||| ||||||||||||||| Sbjct 144572 TCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTATCC 144513 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || || || || | || || | || || || | ||| || || Sbjct 144512 TGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTGTT 144453 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| |||||||| Sbjct 144452 TTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 122 bits (134), Expect = 2e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | |||| ||| || |||||||| ||||| || || ||||| || | || | Sbjct 144182 AGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGT 144123 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || ||||| || || || | || || ||||| ||||| |||||||| Sbjct 144122 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCC 144063 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||||||||| || || || || || || | || ||| | || || || | ||| Sbjct 144062 TTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTG 144003 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| || || |||||||| Sbjct 144002 ATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 >seq239 Length=229837 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||||| |||||||| ||||| | || || || || || || || || || | Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| ||||| || || || || || || || |||||||| || || ||||||| Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || ||| | ||| ||||| || ||||| |||||||| || || ||||| || | Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 104550 ATATCTGCAT 104559 |||||||||| Sbjct 6304 ATATCTGCAT 6313 >seq12 Length=1501184 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||||||||||||||| || || || |||||||| | ||||| | ||| ||||| Sbjct 683659 CCTTCTTTATCCTGAATTTTGGCCTTCACATTTTCGATTGTATCCGATGCTTCAACCTCG 683718 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 683719 AGGGTAATGGTCTTACCCGTGAGAGTTTTCACAAAAATCTGCAT 683762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151301683973648