Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq150 95.1 1e-14 seq239 86.0 5e-12 >seq150 Length=403005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||| || || || ||||||||||| | | || | || || || ||| Sbjct 341378 TGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCTAGTTGC 341319 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| | |||| |||||||||||||| || | | ||| |||||| |||||| Sbjct 341318 TTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTG 341259 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGT 48702 ||| | | |||||||||| | || || || | || | || |||||||| || || Sbjct 341258 GCCTTAACATTTTCTATGGTATCTGAAG-CTTCGACTTCCAAAGTGATGGTTTTCCCAGT 341200 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| ||||| |||||||| Sbjct 341199 AAGAGTTTTTACAAAGATCTGCAT 341176 >seq239 Length=229837 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 |||||||||||||| ||| || | || | ||||||||||||| || | | |||||| Sbjct 6159 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTG 6218 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 || ||| || ||| | | | || || |||| | ||| ||| | || ||| Sbjct 6219 TCTTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATG 6278 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGT 48731 || ||||| |||||||||||||| || |||||||| |||| Sbjct 6279 GTCTTACCCGTGAGAGTTTTCACGAATATCTGCATGGTGT 6318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421217541502556