Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq58 105 8e-18 seq138 100 3e-16 >seq58 Length=824837 Score = 105 bits (116), Expect = 8e-18 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 || || || ||||| |||||||||||||| || |||||||||||||| ||| |||||| Sbjct 742493 TTGGGATGCAAACACGTAAAAGGAATTTTACTATATGGACCTCCTGGTACCGGAAAAACA 742434 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAAT 164616 ||||||||||| || | ||| | |||||| | || || |||||||| ||| Sbjct 742433 TTAATGGCTCGGCAAATAG-GAAAGATGTTAAATGCAAGGGAGCC--AAAAATTGTAAAT 742377 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 ||||| || | ||| | ||||| || || || |||||||| | |||| |||||| Sbjct 742376 GGTCCACAAGTTTTGGATAAATACGTTGGAGAAAGTGAAGCTAACATCAGAAGATTGTTT 742317 Query 164677 CAGGAGGCTGAAGAAGAA 164694 || || ||||| ||| Sbjct 742316 GCTGATGCAGAAGACGAA 742299 >seq138 Length=435971 Score = 100 bits (110), Expect = 3e-16 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 7183 GCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGA 7242 || |||||||||||||| ||||| ||||||||||| || | ||| || |||| | || Sbjct 421275 GCACCAAAATGTCTCCACTGAAAACCATAAATAGGTCCGAGATCGCCCTCTTTCCTATCG 421216 Query 7243 TTAAATCC-TAATCGATTTAAATTAGATTT-TGATCCATAAGCATCCCAAATATGTACAG 7300 |||| || ||| || | || || ||| |||| ||||||||||||| ||| Sbjct 421215 GTAAAGCCATAA--GAATCCAAGAAGTCCCGTGAACCATTCTCATCCCAAATATGAACAT 421158 Query 7301 AtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTA 7360 ||| || | | | ||||||||| || ||||| | ||||| | | ||||| | Sbjct 421157 TTTTGGCTGCCAGTTCTTTAGAATTTGTTGAGCCTTTGATAAACCAAAGTAACTCTTCAA 421098 Query 7361 CTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 ||| | | |||||||| |||||||| || || ||||| || || Sbjct 421097 CTACTGCTCGCCAAAATATTCTTTTAGTTGTCAATAATGGAAA 421055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595823168289600