Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq182 129 3e-25 seq119 122 5e-23 seq46 113 2e-20 >seq182 Length=331840 Score = 129 bits (142), Expect = 3e-25 Identities = 87/96 (91%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| |||| ||||||||| |||||||||| |||||||||||||||||||| Sbjct 106241 AATAAAAAA--AAATATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 106298 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 ||||||||| |||||||||||||||||||||||||| Sbjct 106299 CGACGCTCTAACCAACTGAGCTAATGGGCCGTCGAC 106334 Score = 125 bits (138), Expect = 4e-24 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 105973 AAAAAAAAAAAAAATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 106032 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||||||||||||||||||||| Sbjct 106033 GACGCTCTAACCAACTGAGCTAATGGGCCGT 106063 >seq119 Length=518557 Score = 122 bits (134), Expect = 5e-23 Identities = 89/103 (86%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| ||| || |||| || | |||||||||| |||||||||| ||||||||| Sbjct 392755 AAAAATAAAATAAAAAAAATATGAC-TTGGCCCATGGGGGGATCGAACCCACGACCTTCG 392813 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 392814 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 392856 >seq46 Length=961924 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 193086 AAAAAAAAAAAAAGCTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 193027 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 193026 GACGCTCTAACCAACTGAGCTAATGGGCC 192998 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261470306526256