Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq160 145 7e-30 seq150 129 5e-25 seq239 89.7 5e-13 seq12 87.8 2e-12 >seq160 Length=383029 Score = 145 bits (160), Expect = 7e-30 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 ||| || || ||||||||||||||||| || | ||| || || || ||| || Sbjct 144177 CAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTC 144118 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||| ||||| |||||| | ||||| ||||||||||||||||||||||| ||||| || || Sbjct 144117 CTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 144058 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | |||||| ||||| ||| | | ||||| | ||||| || | ||||| || Sbjct 144057 CTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGT 143998 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || |||||||| || ||||||||||| Sbjct 143997 TTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || ||||||||||||||||| | || || || || ||| || || Sbjct 143717 ACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143658 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| || || ||||||||||||||||| |||||||| || | Sbjct 143657 AGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTGG 143598 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||||||| | | ||||||| ||||| || | ||||| ||||| Sbjct 143597 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTG 143538 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || |||||||| |||||||||||||||| Sbjct 143537 CCGGTTAGAGTTTTGACAAAGATCTGCATGC 143507 Score = 136 bits (150), Expect = 4e-27 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||||||||| | || || || || ||| || || Sbjct 143945 ACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143886 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| || ||||||| ||||||||||||||||||||||| ||||| || || | | Sbjct 143885 AGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGA 143826 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| ||| | | ||||| | ||||| || | ||||| ||||| Sbjct 143825 ATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTG 143766 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || |||||||| |||||||||||||||| Sbjct 143765 CCGGTTAGAGTTTTGACAAAGATCTGCATGC 143735 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||| || || | ||| ||||| || ||| || || Sbjct 143489 ACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCG 143430 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||||||||| ||||||| || || ||||| ||||||||||| |||||||| || | Sbjct 143429 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGG 143370 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||||||| | | ||||||| ||||| || | ||||| ||||| Sbjct 143369 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTG 143310 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || |||||||| |||||||||||||||| Sbjct 143309 CCGGTGAGAGTTTTGACAAAGATCTGCATGC 143279 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| || || |||| ||| ||||| || || | || || || || ||| Sbjct 144636 TCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCC 144577 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||| ||||| |||||| | ||||| ||||| || || || |||||||| |||||||| Sbjct 144576 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTT 144517 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| ||||||||| | | |||||||| ||||| || | ||||| Sbjct 144516 ATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGAT 144457 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || || ||||| |||||||||||||||| Sbjct 144456 TGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCATGC 144419 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| |||||||| || | ||| ||||| || ||| || || Sbjct 143033 ACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCG 142974 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||||||||| ||||||| ||||| ||||| ||||| ||||| ||||| || || | Sbjct 142973 AGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGG 142914 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||||||| | | || |||| || || || | || ||||| || Sbjct 142913 ATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTG 142854 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||||| || || ||||| ||||||||| Sbjct 142853 CCAGTAAGTGTCTTTACAAAAATCTGCATG 142824 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||||||||| ||||||| || || ||||| ||||||||||| ||||| || Sbjct 143207 TCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTA 143148 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || |||||| | | || || | ||||| || | || ||| Sbjct 143147 TCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATG 143088 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || |||||||| |||||||| ||||||| Sbjct 143087 GTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCATGC 143051 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||| || || | ||| || || || ||| ||||| Sbjct 144401 ACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCG 144342 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | ||||| ||||| |||||||| |||||||| |||||||| || | Sbjct 144341 AGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGT 144282 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || ||||| ||| ||||| | ||||| || | ||||||||||| Sbjct 144281 ATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTA 144222 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || ||||| Sbjct 144221 CCTGTGAGTGTCTTGACGAATATTTGCAT 144193 >seq150 Length=403005 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | ||||| || | ||| | || ||||| || || | ||| | Sbjct 341410 TTTGCATTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGT 341351 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| | || | ||| || || || || ||| |||| || || | ||||||| Sbjct 341350 AATCGGAAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGAT 341291 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||||||||| | |||||| ||||| || | | || || | Sbjct 341290 CAGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAG 341231 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || | ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 341230 CTTCGACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATG 341175 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || ||||||||| | ||| ||||| |||||||| |||||||| Sbjct 341559 ATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTT 341500 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || || || | | |||||| | | ||||| |||| || || Sbjct 341499 GTCTTGGATTTTAGCTTTTACATTTTCTATAGTGTCTGAGGCCTCGACTTCAAGGGTAAT 341440 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| ||||||||||| ||||| ||||| Sbjct 341439 GGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGCAT 341404 >seq239 Length=229837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | |||||||| || || || || || || Sbjct 6158 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTT 6217 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | |||||| | | || || |||| || || Sbjct 6218 GTCTTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAAT 6277 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || ||||||||||| || ||||||||| Sbjct 6278 GGTCTTACCCGTGAGAGTTTTCACGAATATCTGCATG 6314 >seq12 Length=1501184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| |||| ||||| ||||||||||| ||||| || | || || || | Sbjct 683409 CCGCCTCGCAAGCGCAGAACCAAATGCAAAGTAGACTCCTTCTGTATATTGTAGTCCGAC 683468 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || ||||||| ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 683469 AGAGTCCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCTTTGCTGATCAGGTGGA 683528 Query 94901 ATACCT 94906 || ||| Sbjct 683529 ATTCCT 683534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448254462536160