Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 176 7e-40 seq265 168 1e-37 >seq1 Length=4914859 Score = 176 bits (194), Expect = 7e-40 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 4262918 TCTTCGCGATAACATCCAAGGTATCACCAAGCCTGCTATCCGTCGTCTGGCTCGACGTGG 4262977 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | ||||| ||| | || ||||| | ||| | ||| ||||| | || Sbjct 4262978 TGGTGTCAAGCGTATATCTGGCTTGATTTACGAAGAAACTCGAGGTGTACTGAAGGTGTT 4263037 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | ||| || | ||||||| || ||| || ||||| || || | || || || Sbjct 4263038 CCTTGAAAACGTCATTCGTGATGCTGTCACCTACACTGAGCATGCGAAGAGGAAAACCGT 4263097 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || | ||||| |||| || || ||||||| |||||| Sbjct 4263098 GACTGCTATGGACGTCGTATACGCCCTGAAACGCCAAGGC 4263137 >seq265 Length=193763 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| | | | | | || |||||||| || || ||||| || |||||||| Sbjct 173576 CGCTAAACGTCACAGAAAAGTTTTACGTGATAACATTCAGGGTATCACGAAACCAGCTAT 173517 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||| | |||||||| || |||||| | ||||||||| | || ||||||| Sbjct 173516 TCGTCGCTTGGCGAGACGTGGTGGCGTAAAGCGTATTTCTGGATTGATTTACGAAGAGAC 173457 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| || ||| | |||||| ||| ||||| | ||||||| | |||||||| Sbjct 173456 TCGAGGTGTCTTAAAGGTTTTCCTCGAGAATGTTATTCGTGATGCTGTTACTTATACCGA 173397 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | || ||||| || | |||||| | || ||||| |||| ||||| || Sbjct 173396 GCACGCCAAGAGAAAAACTGTAACGGCAATGGATGTGGTGTATGCTCTGAAGCGTCAGGG 173337 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||||||||| ||||| Sbjct 173336 AAGAACCTTGTATGGTTTTGGTGGTTAA 173309 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || ||| | | | |||||| |||||||||||||| ||||| || |||||||| Sbjct 176061 CGCTAAACGCCATAGGAAAGTTCTTCGTGATAACATCCAAGGCATCACTAAACCAGCTAT 176002 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | ||| | ||||||||||| ||| | | ||||| || |||||||||| | Sbjct 176001 CCGTCGATTAGCTAGACGTGGTGGAGTTAAGAGAATTTCTGGTCTGATCTATGAAGAAAC 175942 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| |||| | || ||| | | ||| || | |||||| | ||||| || Sbjct 175941 ACGAGGTGTTCTGAAAGTATTTCTCGAAAACGTCATTCGTGATGCGGTTACTTATACTGA 175882 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| | || ||||| || | |||||| |||| || || | ||||||||||| Sbjct 175881 ACATGCTAAGAGAAAAACTGTAACGGCTATGGATGTCGTTTACGCTCTCAAACGTCAAGG 175822 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 175821 AAGAACTTTGTACGGATTTGGTGGTTAA 175794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069205803308