Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq1347 98.7 1e-16 seq664 98.7 1e-16 seq306 86.0 6e-13 seq1356 84.2 2e-12 >seq1347 Length=31203 Score = 98.7 bits (108), Expect = 1e-16 Identities = 174/248 (70%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 685 CACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGGGCACTCTGGG 744 ||| | ||||| ||||| || | ||||| | ||||||| || ||| | ||||| ||||| Sbjct 20934 CACGCGAAGAACACGTGTTCAGAATCTTTACTGACTCCGGGACAGCACGGGCATTCTGGT 20993 Query 745 GAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGATAACATC 804 ||| | || |||||| | ||||| | | ||| || || || | ||| |||| Sbjct 20994 GAAGTGTCGTGCTTGTATTTAAAAAGATATTCTCTGAAGCACCCATGCCGAGAT--CATC 21051 Query 805 TGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGTTGATCCTT--G 862 || || | || ||||||||||| |||||| ||||| | ||| || | | ||| | Sbjct 21052 TGCGTCAAGTAGTAGTTGACCTCTCCGTGATCGCGGTTCAACCAGACCT--CTACTTCAG 21109 Query 863 GTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAG-TTGCCATCGA 921 | |||||||| | ||||| || || || |||| | ||||| ||| ||||||||| Sbjct 21110 GGATGAGACGGTAAGTCCACCTGCCGTTAGTTGTGTTGTTCCACT-TAGTTTGCCATCGC 21168 Query 922 CTTATGCT 929 | |||||| Sbjct 21169 CGTATGCT 21176 >seq664 Length=61003 Score = 98.7 bits (108), Expect = 1e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 675 AAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGG 734 ||| || | ||| | || || || ||||||||||||||| | | ||| |||| || Sbjct 5417 AAATCGGGGGCAGACGAAAAAGACATGCTCTGCATCTTCAATTATTCCGACGCAGTTGGG 5358 Query 735 GCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCC 794 || || ||||||| | || ||| | | ||||| ||||||||| |||||||||| || Sbjct 5357 ACAGTCAGGGGAATCTTTATATTTGAACCTATGGAGGTACGCCCGGTAACAGCCGTGGCC 5298 Query 795 TGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGTT 854 |||| |||||| || || || ||||| | ||| || || |||||| | ||| | Sbjct 5297 GGATATCATCTGGGTTAGGTAGTAGTTCAACTCTCCATGCTCCCGGTTCACCCATGGCTC 5238 Query 855 GATCCTTGGTATGAGACGATGCGTCCATCTACCATTC 891 | ||||||| || || | |||||| | || ||| Sbjct 5237 TAGGTTTGGTATTAGCTGACGTGTCCATTTTCCTTTC 5201 >seq306 Length=153274 Score = 86.0 bits (94), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 675 AAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGG 734 |||| | | |||||||||||| ||||| || || | || | ||| |||| ||| | ||| Sbjct 96416 AAAATGCGGGCACTCAAAGAATACGTGTTCAGCGTTCTCCTCGACACCTGCGCACGTTGG 96475 Query 735 GCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCC 794 ||| || |||| || |||| || | | || ||| || ||| ||||||||||| Sbjct 96476 GCAGTCCGGGGCATCTTCATAATTAAATTTATAAAGGTACTTCCAGAAGCAGCCGTGTCC 96535 Query 795 TGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTG 833 || | || ||| || ||||||||| ||| ||| ||||| Sbjct 96536 TG--AGCACCTGAGTGAGATAATAGGTGAGCTCCCCGTG 96572 >seq1356 Length=38486 Score = 84.2 bits (92), Expect = 2e-12 Identities = 170/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 685 CACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGGGCACTCTGGG 744 ||| | ||||| ||||| || | ||||||| ||||||| | ||| | ||||| ||||| Sbjct 34834 CACGCGAAGAACACGTGTTCAGAATCTTCACTGACTCCGAGACAGCACGGGCATTCTGGT 34893 Query 745 GAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGATAACATC 804 ||| | | |||||| | |||||| | | ||| || | || ||||| | ||| Sbjct 34894 GAAGTGTTGTGCTTGTATTTAAAGAGATATTCTCTGAAGCACTCATGCCCTGAGATTATC 34953 Query 805 TGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGTTGATCCTT--G 862 || || | || ||||||||||| |||||| || || | ||| || | | ||| | Sbjct 34954 TGCGTCAAGTAGTAGTTGACCTCTCCGTGATCGCGATTCAACCAGACCT--CTACTTCAG 35011 Query 863 GTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAG-TTGCCATCGA 921 | |||||||| | ||||| || || || |||| | || | ||| ||||||| | Sbjct 35012 GGATGAGACGGTAAGTCCACCTGCCGTTAGTTGTGTTGTTCCTC-CTAGTTTGCCATTGC 35070 Query 922 CTTATGCT 929 | |||||| Sbjct 35071 CGTATGCT 35078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50946537768616