Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq150 114 1e-20 seq160 98.7 9e-16 >seq150 Length=403005 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | ||||| ||| | || || | |||||||| || Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || || ||| ||||||||||| || ||||| ||||| Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 341295 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| | ||| |||||||| ||||||| |||| | | |||||| ||| Sbjct 341296 CAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAAC 341355 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || |||||||| ||| |||| Sbjct 341356 ATCCAGAAAGAATCCACACTTCA 341378 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | ||||||||| | |||||| | |||||||||||| Sbjct 341403 AATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTC 341462 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| || || |||||||||||||| ||||||||||| Sbjct 341463 AGACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCA 341522 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | || || || | ||||||| |||| | | |||||| || Sbjct 341523 ACAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAA 341582 Query 24170 CAT 24172 ||| Sbjct 341583 CAT 341585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||||||||| |||||||||||||| | || || | | || || || | ||| Sbjct 341915 GACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAACAGTTGGAA 341974 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | ||||| ||||| || |||||||| ||| | |||||||| || Sbjct 341975 GATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACATTTAGTTTTG 342034 Query 24204 AGATTGAGAGGAGGACTATAA 24224 ||| | | ||||| || ||| Sbjct 342035 AGACTTCGGGGAGGTCTCTAA 342055 >seq160 Length=383029 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||| | || || ||| | || || | || ||||| || Sbjct 144193 ATGCAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCG 144252 Query 24051 GACACCATCGAGCAAGTCAAA--CAAAAGATTAC-CGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | |||||| ||||| ||| || |||||||| || ||||| ||| Sbjct 144253 GACACCATCGAGAATGTCAAAGCCAAAA---TACAGGATAAAGAAGGAATTCCTCCGGAT 144309 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAAC-GTCAGCGATT 24165 || |||||| |||| | || ||| ||||| ||||| || ||| | || ||| || | Sbjct 144310 CAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTC--GGACT 144367 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| || |||||||| || | ||||| || Sbjct 144368 ACAACATCCAGAAAGAATCAACTCTACATTTGGT 144401 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || ||| | || || | ||||||||||| Sbjct 144421 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 144480 Query 24051 GACACCATCGAGCAAGTCAA--ACAAAAGATTAC-CGACAAAGAAGGCATACCTCCCGAT 24107 ||||| || ||| | ||||| ||||| ||| || |||||||| || ||||| || Sbjct 144481 GACACTATTGAGAACGTCAAGGCCAAAA---TACAGGATAAAGAAGGAATTCCTCCGGAC 144537 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAAC-GTCAGCGATT 24165 ||||||||| |||| | || ||| ||||| ||||| || ||| | || ||| || | Sbjct 144538 CAACAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTC--GGACT 144595 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | || || || |||||||| || | |||||||| Sbjct 144596 ACAATATACAGAAAGAATCCACTCTGCATTTAGT 144629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || || | ||||||||||| | Sbjct 143965 ATGCAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCC 144024 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || || ||| || || ||||| || ||||| ||||| Sbjct 144025 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 144084 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168 || ||| |||| | || ||| ||||| ||||| || ||| | | ||| || || | Sbjct 144085 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTC--GGACTACA 144142 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||| || || |||||||| | |||||||| || || Sbjct 144143 ACATCCAGAAGGAATCTACTTTGCATTTAGTCTTGAG 144179 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || ||| | || || | ||||||||||| Sbjct 143509 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 143568 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || || || |||||||| || ||||| ||||| Sbjct 143569 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAG 143628 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168 ||||| |||| | | || || ||||||||||| ||| | | |||| || || | Sbjct 143629 CAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCA--GACTACA 143686 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | || ||||| |||||||| | ||||| || Sbjct 143687 ATATCCAAAAGGAATCTACTTTACATTTGGT 143717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429901647576180