Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq288 210 1e-49 seq6072 125 5e-24 seq2321 122 6e-23 seq2106 122 6e-23 seq318 120 2e-22 seq1867 118 7e-22 seq1724 118 7e-22 seq1363 118 7e-22 seq885 116 2e-21 seq2869 114 9e-21 seq1389 107 1e-18 seq1320 107 1e-18 seq901 107 1e-18 seq2738 98.7 7e-16 seq673 98.7 7e-16 seq150 93.3 3e-14 seq239 91.5 1e-13 seq4089 89.7 3e-13 seq589 82.4 5e-11 >seq288 Length=172500 Score = 210 bits (232), Expect = 1e-49 Identities = 285/396 (72%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| ||||||| | |||| || ||||| ||||| || || ||||| || ||||| || Sbjct 160410 CACTATGGGGAGCGTGAATGTCAATCGCAATGTCAGCGATGCCTTCTATCGTTACAAGAT 160469 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 ||| || || || || || || ||||| |||||||| || ||||| || |||||||| Sbjct 160470 GCCACGGATTCAGGCAAAAGTGGAAGGTAAAGGAAACGGCATCAAAACAGTGATTGTCAA 160529 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 |||| || || || || || | || || || || || || ||||| ||||||||||| Sbjct 160530 CATGGTAGATGTAGCAAAAGCCATAGGTCGTCCAGCTACATATCCGACTAAATATTTCGG 160589 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGG 6397 |||||||| ||||| || || || |||||| || ||||| ||||| ||||| || || Sbjct 160590 CTGCGAACTGGGCGCACAAACTCAATTTGATTTTAAGAACGAACGCTTTATCGTCAATGG 160649 Query 6398 ATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCT 6457 ||||| | | | || ||||| || || | || || ||||| || || | ||| || Sbjct 160650 TTCGCACGATGCAACGAAACTGCAAGATTTGTTGGATGGTTTTATCCGAAAATATGTCCT 160709 Query 6458 GTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGT---GTCTACCAAGAGAAACAC 6514 |||| | || || || |||||||||||||| || || |||| ||| | || Sbjct 160710 TTGTCCAGCTTGTGACAATCCGGAGACCGAGCTGATGGTTAGCTCTAAGAAGGG---GAC 160766 Query 6515 CATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 || || || ||||||||||| || ||| | ||||| Sbjct 160767 GATATCGCAAGGCTGCAAAGCCTGTGGTCATCATGG 160802 >seq6072 Length=1319 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 131 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 132 GGTCGTATTTAGCCTTA 148 >seq2321 Length=22588 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||| |||||||||| || |||||||| Sbjct 8361 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAGGTAGATAGGGACAGAGGGAATCTCGT 8420 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| |||||||||||||| Sbjct 8421 TAATCCATTCATGCGCGTCATTAATTAGATGACGA 8455 >seq2106 Length=19525 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 11895 CTCTCTCTTCAAAGTTCTTTTCAACTTTCTCTCACGGTACTTGTTCGCTATCGGTCTCGT 11836 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 11835 GGTCGTATTTAGCCTTA 11819 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||| |||||||||||| | |||||||||| || |||||||| Sbjct 15055 AAGCCCGTTTCCTTGGCAGTGGTTTCGCTAAAAGGTAGATAGGGACAGAGGGAATCTCGT 14996 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| | ||| ||||||||| |||||||| || Sbjct 14995 TAATCCAATTATGTGCGTCACTACTTAGATGATGA 14961 >seq318 Length=146526 Score = 120 bits (132), Expect = 2e-22 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 116249 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATTGGTCTTGC 116308 Query 20007 GGTAATATTTAGCCTT 20022 ||| ||||||||||| Sbjct 116309 GGTCCTATTTAGCCTT 116324 >seq1867 Length=22164 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||| |||||| |||||||||| || |||||||| Sbjct 5375 AAGCCCGTTCCCTTGGCAGTGGTTTTGCTAGAAGGTAGATAGGGATAGAGGGAATCTCGT 5434 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||| |||||||||| Sbjct 5435 TAATCCATTCATGCGCGTCACTAAGTAGATGACGA 5469 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| ||| Sbjct 11864 CTCTCTCTTCAAAGTTTTTTTCAACTTTCCCTCAAGGTACTTGTTTGCTATTGGTTTCGT 11923 Query 20007 GGTAATATTTAGCCTTA 20023 ||| | |||||||||| Sbjct 11924 GGTTGTGTTTAGCCTTA 11940 >seq1724 Length=27161 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||| ||| |||||| || |||||||| Sbjct 12390 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAGGTACATAGGGACAGAGGGAATCTCGT 12449 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| |||||||||||||||||||||||| Sbjct 12450 TAATCCATTCGTGCGCGTCACTAATTAGATGACGA 12484 >seq1363 Length=30746 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||| |||||| |||||||||| || |||||||| Sbjct 8502 AAGCCCGTTCCCTTGGCAGTGGTTTTGCTAGAAGGTAGATAGGGACAGAGGGAATCTCGT 8561 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||| |||||||||| Sbjct 8562 TAATCCATTCATGCGCGTCACTAAGTAGATGACGA 8596 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||||||||| |||| || |||||||||||||| ||||||||| ||| Sbjct 11391 CTCTCTCTCCAAAGTTCTTTTTAACTGTCTTTCACGGTACTTGTTTGCTATCGGTTTCGT 11450 Query 20007 GGTAATATTTAGCCTTA 20023 ||| | ||||| |||| Sbjct 11451 GGTTGTGTTTAGTCTTA 11467 >seq885 Length=44800 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 33910 CTCTCTTTTCAAAGTTCTTTTTAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 33969 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 33970 GGTCGTATTTAGCCTTA 33986 >seq2869 Length=17987 Score = 114 bits (126), Expect = 9e-21 Identities = 68/71 (96%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1189 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGTGGTCGT 1130 Query 20013 ATTTAGCCTTA 20023 ||||||||||| Sbjct 1129 ATTTAGCCTTA 1119 >seq1389 Length=39678 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| Sbjct 33670 CTCTCTCTTCAAAGTTTTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATTGGTCTCGT 33611 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 33610 GATTGTATTTAGCCTTA 33594 >seq1320 Length=32015 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||| Sbjct 11731 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCTTTACGGTACTTGTTTGCTATCGGTATCGT 11672 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 11671 GGTCGTATTTAGCCTTA 11655 >seq901 Length=49467 Score = 107 bits (118), Expect = 1e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19952 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAA 20011 ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 28930 TCTTCAAAGTTCTTTTCAACTTTCCTTCACGGTACTTGTTCGCTATCGGTCTTGTGGTCG 28871 Query 20012 TATTTAGCCTTA 20023 |||||||||||| Sbjct 28870 TATTTAGCCTTA 28859 >seq2738 Length=13236 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| | |||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 10446 CTCTTTTTTCACAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTTGCTATCGGTCTCGT 10505 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| ||| Sbjct 10506 GGTCGTATTTAGCTTTA 10522 >seq673 Length=72440 Score = 98.7 bits (108), Expect = 7e-16 Identities = 72/85 (85%), Gaps = 8/85 (9%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 38813 CTCTCTCTTCAAAGTTCTTTTCAACTTTTCCTCACGGTACTTGTTTGCTATTGGTCTCGT 38754 Query 20007 GGT--------AATATTTAGCCTTA 20023 ||| | |||||||||||| Sbjct 38753 GGTCGAGACCGATTATTTAGCCTTA 38729 >seq150 Length=403005 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| || | ||||| ||| || || || || |||||||| || | | | | Sbjct 341390 CGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCA 341331 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || |||| ||| || |||||||| || | || || ||||| | || | ||||||||| Sbjct 341330 TCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTG 341271 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| |||||| ||| ||||| | | |||||| | ||| ||||| || || || Sbjct 341270 TCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATG 341211 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || | ||||| || || ||||||||| Sbjct 341210 GTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATG 341175 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || || ||||| || ||||| ||||| ||||||||||||| || | |||||||||| Sbjct 341558 TCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTTG 341499 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||||| || ||||| | | ||| ||| || ||||| | ||||| Sbjct 341498 TCTTGGATTTTAGCTTTTACATTTTCTATAGTGTCTGAGGCCTCGACTTCAAGGGTAATG 341439 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | ||||||||||| || ||||| Sbjct 341438 GTTTTTCCAGTGAGAGTTTTCACGAAGATTTGCAT 341404 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || ||||| || ||| || || || || ||||||||||| | | | | | || Sbjct 342034 CAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTTCTTCCATC 341975 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || || ||||| || ||||| ||||| ||||||||||||| || | |||||||||||| Sbjct 341974 TTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTTGTC 341915 >seq239 Length=229837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || |||||||| ||||| | | |||| | || || | || || ||||| || Sbjct 6123 CCTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 6182 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | |||| || || ||||| ||| || ||||||||| Sbjct 6183 ATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTT 6242 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||| || ||| || || | ||||| || |||||||| | ||||||||| Sbjct 6243 TCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACG 6302 Query 38307 AATATCTGCATG 38318 |||||||||||| Sbjct 6303 AATATCTGCATG 6314 >seq4089 Length=5438 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 5/72 (7%) Strand=Plus/Plus Query 25925 TTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTA 25979 ||||||||| |||||||||| || |||||||||||||| |||||||||||||||| Sbjct 1 TTCGCTAGAAGGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 60 Query 25980 ATTAGATGACGA 25991 |||||||||||| Sbjct 61 ATTAGATGACGA 72 >seq589 Length=66172 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| | || |||| || || |||| |||||| ||||||| || | |||||||| Sbjct 50522 AAGCTCTTTTCCTTAGCAGTAGTTTTGCTAGAAGGTAGATAAGGATAGAGAGAATCTCGT 50581 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||||| ||||||||||||||||||||||| Sbjct 50582 TAATCCATTCATGCGCGTCACTAATTAGAT 50611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334920437300036