Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq144 98.7 1e-15 seq60 98.7 1e-15 seq108 93.3 5e-14 >seq144 Length=417326 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 |||||||| || ||| | | || | || ||||| || || || ||||| ||||| || Sbjct 7533 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 7592 Query 63506 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 | || || || ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 7593 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 7651 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 | || || || | ||| |||||||| |||||||| || || |||||| || || || Sbjct 7652 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 7711 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 || |||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 7712 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 7771 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCC 63712 ||| || ||| |||| | ||| | ||| Sbjct 7772 GTATATTATAGCCGAATCCAGTCTTTCC 7799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || ||||| | ||||| | | ||||| || ||||| || ||||| ||| Sbjct 6063 CCTTCGTACGTTTCGTAAGTTCCTTTTTCCATAGCTATCTCGCAACTGGCTTCTAAGGCA 6122 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 | ||| |||| |||||||||||||| | ||||| || | |||||| ||| ||||| Sbjct 6123 CTGTAGTAAAGCGTTTCGAAGATCTTAATGTTTAGTTCCTTCGCTTCTTTGCTCTCAAAC 6182 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| | | | | |||||| || |||| ||||| | || ||||| Sbjct 6183 GGATACCTCATCAACAAAAACGCATCCGCTAGCCCTTGTATTCCGATACC 6232 >seq60 Length=814933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 |||||||| || ||| | | || | || ||||| || || || ||||| ||||| || Sbjct 813408 CTAGACATCTGCTGATTATTTGTGCAGGCGTTAAACAACGTTGGCGAAGCATGAGTGAAG 813467 Query 63506 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 | || || || ||| ||||||||||| ||| | || ||||| || ||||| Sbjct 813468 TAACGCTCGGATAAATAG-TTGTACGTCTCTATAACCCTATCGATATCGTCTTCGTGAAT 813526 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 | || || || | ||| |||||||| |||||||| || || |||||| || || || Sbjct 813527 AGCAACGGCCACTCTCATCAACATGTGTTGAGGTCTCTCCACTATCTTGCCATTGATCTT 813586 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 || |||||| | || | ||||| ||||| | || ||||| ||||||| || Sbjct 813587 CAGCAAGTAACTCCTCTCGAGCGTTTTGAAACCGATGTAATTGTAACTGAAGTCTCTGTC 813646 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCC 63712 ||| || ||| |||| | ||| | ||| Sbjct 813647 GTATATTATAGCCGAATCCAGTCTTTCC 813674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || ||||| | ||||| | | ||||| || ||||| || ||||| ||| Sbjct 811938 CCTTCGTACGTTTCGTAAGTTCCTTTTTCCATAGCTATCTCGCAACTGGCTTCTAAGGCA 811997 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 | ||| |||| |||||||||||||| | ||||| || | |||||| ||| ||||| Sbjct 811998 CTGTAGTAAAGCGTTTCGAAGATCTTAATGTTTAGTTCCTTCGCTTCTTTGCTCTCAAAC 812057 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| | | | | |||||| || |||| ||||| | || ||||| Sbjct 812058 GGATACCTCATCAACAAAAACGCATCCGCTAGCCCTTGTATTCCGATACC 812107 >seq108 Length=566964 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 63812 CTAAATAGtttttt-tGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 63870 ||||| ||| || | |||||||||||| | ||| |||| ||| ||||||||||| || | Sbjct 479101 CTAAA-AGTCTTCTCTGTTTCTTTGTGCAAATTAGATATGGCAATTCTAGCGGCCAGTGT 479159 Query 63871 GGCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||||||| |||||||| | || || | | |||| |||| ||||| | | |||||| Sbjct 479160 TGCATAATCTGGATGTTGAG-AGATCAGGCTTACTGCGGTTTCAGCTGCTATATTGTCCA 479218 Query 63930 ATTCTACCGTTGTTACACC 63948 ||| |||||| ||| ||| Sbjct 479219 CTTCGACCGTTCTTATACC 479237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633580073857600