Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq160 129 5e-25 seq150 120 3e-22 >seq160 Length=383029 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| | |||||| | ||||| ||| ||||| Sbjct 144421 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 144480 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| ||||| || |||||||| ||||| || |||||| Sbjct 144481 GACACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCAA 144540 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || ||||| || || | || || | ||||| || || |||||| Sbjct 144541 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAT 144600 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTA 25234 || || ||||||||||| || |||||||| || | || | || ||||| || || Sbjct 144601 ATACAGAAAGAATCCACTCTGCATTTAGTTCTGCGACTTCGTGGTGGAAAGTAGTA 144656 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||||||||| | || || || |||| || | ||||| ||| || Sbjct 142822 ACCATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCG 142881 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || ||| | ||| |||||| || || ||||| |||||||| ||| Sbjct 142882 TCTGATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGAC 142941 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || ||||| | ||||| | ||||| || |||||| Sbjct 142942 CAGCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTAC 143001 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| | ||||| || || Sbjct 143002 AACATCCAGAAGGAATCCACTTTGCATTTGGTTCT 143036 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | || |||||| ||||||| | || || || |||| Sbjct 144193 ATGCAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCG 144252 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| || || |||||||| ||||| || || Sbjct 144253 GACACCATCGAG--AATGTCAAAGCCAAAATACA-GGATAAAGAAGGAATTCCTCCGGAT 144309 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || || ||||| || || | || || | ||||| || || ||| Sbjct 144310 CAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTAC 144369 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || |||||||| || || Sbjct 144370 AACATCCAGAAAGAATCAACTCTACATTTGGTACT 144404 >seq150 Length=403005 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| ||| | || || ||| ||||||| | ||||| || | || Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | |||| ||| ||||||||||| ||||| ||||| || Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAATTCAG-GACAAAGAAGGAATTCCTCCTGATCA 341294 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||||||||| || ||| ||||||||| | || | ||||||||| Sbjct 341295 GCAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAA 341354 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| || || | || | | || ||||||||| Sbjct 341355 CATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGAGGAGGAA 341404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| ||||| || || ||||| || | || ||||| || ||||| || ||| Sbjct 341915 GACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAACAGTTGGAA 341974 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | ||| | |||||||| || || ||||||||||| ||||||||||| | Sbjct 341975 GATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACATTTAGTTTTG 342034 Query 25212 AGGCTAAGAGGAGG 25225 || || | ||||| Sbjct 342035 AGACTTCGGGGAGG 342048 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | || || ||| |||| || | ||||| ||| | || Sbjct 341403 AATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTC 341462 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || | || |||| |||| || ||||||||||| ||||| || || Sbjct 341463 AGACACTATAGAA--AATGTAAAAGCTAAAATCCAA-GACAAAGAAGGCATTCCTCCCGA 341519 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||||| || | || ||||| || ||||| || ||||||| Sbjct 341520 TCAACAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATG 341560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433293376551140