Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq63 132 5e-26 seq141 116 4e-21 seq42 107 2e-18 >seq63 Length=804878 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| ||||| || || | ||||||||||| || | ||||| | | ||||| |||| Sbjct 4979 CTTCATCTCGCGAGATGAGTTCATTGCTGAAAGTAAGGCCTGGCATAACCCCTCGCTTCT 4920 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | | |||||| || | |||||||| || || || || || || || ||||| |||| Sbjct 4919 TTAACCAAAAGATCGCGGCAAAACTGCCGCTGAAGAAGATTCCCTCGACCGCTGCGAATG 4860 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTTAAAGCCCAATCG 93292 | | | |||||||| ||| |||| | | || | |||||||| ||| ||||||| Sbjct 4859 CGAGTACACGTTCGGGAAACGTTGC-GCTCTCGTGATGGATCCATTGTAACGCCCAATTA 4801 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||||||| | ||||| || |||||||| |||||||| | | |||||| Sbjct 4800 GCTTTTTTCTTCACGCAAGGGAGAGTTTCGATCGCGTTAAACAAGAAATCTC 4749 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || ||||||| ||||||||||| | || ||| |||| |||||||| ||||| ||||| Sbjct 770 TCTACTTCTTGTACAGTCCAAAAGGTGGCCTCTACTTTCTTGTACATGTCCCAAATGTCG 711 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATT 93681 |||| ||||| ||||| || ||||| ||||| Sbjct 710 GGATAGTGAATGGGAAAAATTACAAAGCGATT 679 >seq141 Length=421565 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 127441 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGTCTGGGAGCGTGG 127500 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||| | || || Sbjct 127501 GTTCGAACCCCACACCTGGCAAAATTTTTTT 127531 >seq42 Length=1005739 Score = 107 bits (118), Expect = 2e-18 Identities = 75/83 (90%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 466574 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGTCTGGGAGCGTGG 466633 Query 126327 GTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||| | |||| Sbjct 466634 GTTCGAACCCCACACTTAGCAAA 466656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556815165257440