Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq150 134 1e-26 seq239 118 9e-22 seq160 98.7 8e-16 seq144 95.1 1e-14 seq60 95.1 1e-14 >seq150 Length=403005 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || ||||| ||||| | ||||| ||| | | Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || |||||||| ||||| || || ||||| || ||||| Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 341295 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || || |||| ||| | ||| | |||||||||||| Sbjct 341296 CAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAAC 341355 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||||||||| | || | |||||||| | || ||||| Sbjct 341356 ATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGAGGAGG 341402 Score = 129 bits (142), Expect = 5e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||| || || ||||| ||||||||||||||||| || ||||| || ||| Sbjct 341906 AAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAA 341965 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||| | || | || ||||||||||| || ||||||||||| ||||| Sbjct 341966 CAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACAT 342025 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || | || |||||| Sbjct 342026 TTAGTTTTGAGACTTCGGGGAGGT 342049 Score = 125 bits (138), Expect = 6e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||| | || || ||||| | || |||||||| || || | Sbjct 341404 ATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTCA 341463 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| |||||||| || || ||||| ||||||||| Sbjct 341464 GACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 341523 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || |||||||| || ||| | ||| | |||||||||||| Sbjct 341524 CAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAAC 341583 Query 22399 AT 22400 || Sbjct 341584 AT 341585 >seq239 Length=229837 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | || ||||| || | || ||||| |||||| || || Sbjct 6313 ATGCAGATATTCGTGAAAACTCTCACGGGTAAGACCATTACCCTTGAGGTGGAAGCCTCC 6254 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||||||||||||||| || ||||| ||||| Sbjct 6253 GACACTATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATCCCACCGGATCAG 6194 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| || || |||| || ||||| Sbjct 6193 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTCTCTCTGACTACAAT 6134 Query 22399 ATTCAAAAAG 22408 || || |||| Sbjct 6133 ATCCAGAAAG 6124 >seq160 Length=383029 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | ||||| ||||| |||| || ||||| || | | Sbjct 143281 ATGCAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCT 143340 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| ||||| || || || ||||| || || || Sbjct 143341 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAG 143400 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | || || ||||| | || ||||||||| Sbjct 143401 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143460 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||| || ||||||| || Sbjct 143461 ATACAGAAAGAATCAACTCTACATTTGGT 143489 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | ||||| ||||| |||| | ||||| || | | Sbjct 144421 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 144480 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| || || || || || ||||| || || ||| Sbjct 144481 GACACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCAA 144540 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || ||| | ||||| ||||| | || || ||||| Sbjct 144541 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAT 144600 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||||||||| | ||||||||| ||||| | || || || Sbjct 144601 ATACAGAAAGAATCCACTCTGCATTTAGTTCTGCGACTTCGTGGTGG 144647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || | || | ||||| || | | Sbjct 142825 ATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCGTCT 142884 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||||| ||||| ||||| || |||||||| || || Sbjct 142885 GATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAG 142944 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | || || ||||| | || ||||||||| Sbjct 142945 CAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143004 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || |||||||| | ||||| ||| Sbjct 143005 ATCCAGAAGGAATCCACTTTGCATTTGGTT 143034 >seq144 Length=417326 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || || ||||||||||| || ||| ||| | | |||||||| ||||| | | Sbjct 6525 ATGGATGCCAAATTGCACACAGCAACTTCATCCGGGCTGGAGTACTCGATGATTTCAGTG 6584 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 ||||| ||||| |||||| ||||| | ||||| ||||| |||| |||||| | Sbjct 6585 CACAAGTTACTGCATTTAATCGTGCCTAGATGCTGGTGATTTGATTTCCGATTGCAATGA 6644 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 ||||| || | |||||| ||||| |||||||| ||||||| Sbjct 6645 TCTTTATAAAGCATGTAAGGCGTTCCCGTTTCCACTTGCG 6684 >seq60 Length=814933 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || || ||||||||||| || ||| ||| | | |||||||| ||||| | | Sbjct 812400 ATGGATGCCAAATTGCACACAGCAACTTCATCCGGGCTGGAGTACTCGATGATTTCAGTG 812459 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 ||||| ||||| |||||| ||||| | ||||| ||||| |||| |||||| | Sbjct 812460 CACAAGTTACTGCATTTAATCGTGCCTAGATGCTGGTGATTTGATTTCCGATTGCAATGA 812519 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 ||||| || | |||||| ||||| |||||||| ||||||| Sbjct 812520 TCTTTATAAAGCATGTAAGGCGTTCCCGTTTCCACTTGCG 812559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419694463208140