Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq150 181 2e-40 seq160 167 4e-36 seq239 140 6e-28 seq8 84.2 4e-11 >seq150 Length=403005 Score = 181 bits (200), Expect = 2e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||||||||| || | ||| || ||||| ||||| |||||||| ||||||| Sbjct 341404 TTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGG 341345 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||||| ||||| ||||| || || | | || || || || | Sbjct 341344 AAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAG 341285 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| ||||| ||||| || ||||| || || ||||| |||| | ||| | Sbjct 341284 GAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGA 341225 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||||| ||||||||||| || || || || || || || |||||||| ||| Sbjct 341224 CTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATGATG 341172 Score = 141 bits (156), Expect = 2e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 68280 ATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTT 68339 ||||| |||||||| || || || |||||||| ||||| || || || || || || | | Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| ||||| ||||||||||| |||||||| || || || || || || || ||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| | || ||||| | ||| ||||||||||| ||||| || || ||||| || ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 68460 ATT 68462 ||| Sbjct 341405 ATT 341403 Score = 134 bits (148), Expect = 3e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | ||| || || ||||| ||||| ||||| |||||||| ||||| || Sbjct 342048 CCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAA 341989 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| ||||| || || || || || || | |||||| ||||| ||| Sbjct 341988 AGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGA 341929 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 |||||||| |||||||| ||||| || || || Sbjct 341928 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTAC 341897 >seq160 Length=383029 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||| ||||| || || ||||| |||||||| || || || Sbjct 144419 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGAC 144360 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | |||||| |||||||| || | ||| || || || || ||| Sbjct 144359 AGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 144300 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || || || || || ||||| |||||||||||| | | ||| || Sbjct 144299 ATTCCTTCTTTATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACC 144240 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 144239 TCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || | ||||| || || |||||||| ||||| || Sbjct 143051 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGAC 142992 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || ||||| | ||| || || || || || | ||| || ||||| |||||| Sbjct 142991 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGA 142932 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| || || ||||||||| ||| || || || | | |||||| Sbjct 142931 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACT 142872 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 |||||||| ||||| || || || || ||||| || || |||||||| |||| Sbjct 142871 TCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCATGGTGCT 142819 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||| ||||| || || ||||| ||||| || || || || Sbjct 143279 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGAC 143220 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || ||||| | ||| || || || || || | || || ||||| || ||| Sbjct 143219 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 143160 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || ||||| || || |||||| || ||||| || | | ||| ||| Sbjct 143159 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACT 143100 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| |||||||| || || || || ||||| || || ||||| Sbjct 143099 TCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 >seq239 Length=229837 Score = 140 bits (154), Expect = 6e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| ||||| || || || ||||| || | ||||| || | |||||| |||||||| | Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||| | || || || ||||| || || ||||||||||||||||| ||||| || | Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || ||||| | | ||| || || | ||| ||||| || |||||||| || || |||| Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 68452 ATATCTGCAT 68461 |||||||||| Sbjct 6304 ATATCTGCAT 6313 >seq8 Length=1703481 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 |||||||||| |||||||||||| ||||| || ||||||| || |||||||||||| Sbjct 592237 GAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 592296 Query 84512 GAGCCCCACATCGGGC 84527 ||||||||| | |||| Sbjct 592297 GAGCCCCACGTTGGGC 592312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921546873044320